Cytoscape Wiki
Request for Comments (RFCs)
About RFCs
RFCs represent one possible mechanism for soliciting feedback for core Cytoscape features / refactoring. For details on RFCs in general, check out http://en.wikipedia.org/wiki/Request_for_Comments the Wikipedia Entry: Request for Comments (RFCs)
RFC Template
Creating a new RFC? Use the RFCTemplate and add a link to table below.
RFC Index
Name of RFC |
Date of RFC Creation |
Target |
Status |
Please add your next RFC here... |
... the date |
... the target release |
... and the status |
RFC 67: App Manager Error Handling |
2015-04-29 |
3.3 |
draft |
RFC 68: Remote Job API |
2015-06-04 |
3.3 |
draft |
Legacy RFCs
Name of RFC |
Date of RFC Creation |
Target |
Status |
RFC 66: Cytoscape Web Site Renewal |
2010-05-19 |
2.8 |
draft |
RFC 65: Add attribute reference equations as attributes |
2009-12-22 |
2.8 |
draft |
RFC 64: Cytoscape Commons: a site for plugin development |
2009-04-21 |
3.0 |
draft |
RFC 63: Event handling in Cytoscape 3.0 |
2008-11-21 |
3.0 |
draft |
RFC 62: Support for Data Provenance in Cytoscape 3.0 |
2008-11-20 |
3.0 |
draft |
RFC 61: Automatic Bug reporter of Cytoscape |
2008-09-19 |
3.0 |
open |
RFC 60: Advanced Network Merge and ID Mapping API |
2008-05-02 |
2.6 |
open |
RFC 59: Cytoscape Book |
2008-05-02 |
3.0 |
RFC under construction |
RFC 58: Pathway Walking Plugin |
2007-12-05 |
2.5 |
being coded |
RFC 57: Cytoscape Rewrite (alt to RFC 46) |
2007-10-30 |
3.0 |
open |
RFC 56: Visual Style Simplification |
2007-10-29 |
3.0 |
open |
RFC 55: Web Front End for Cytoscape |
2007-10-24 |
3.0 |
open |
RFC 54: Cytoscape Themes: A Pinch of Syntactic Sugar |
2007-10-24 |
3.0 |
in testing |
RFC 53: SubgeneViewer: Cytoscape from Service Provider Perspective |
2007-10-23 |
2.7 |
open |
RFC 52: Event Handling System |
2007-10-23 |
3.0 |
open |
RFC 51: Cytoscape Projects |
2007-10-23 |
3.0 |
open |
RFC 50: Task Management |
2007-10-17 |
3.0 |
open |
RFC 49: Viewing groups |
2007-09-26 |
2.x |
open |
RFC 48: Plugin Themes |
2007-09-13 |
2.6 |
being coded |
RFC 47: Plugin Interface Refactor |
2007-08-24 |
3.0 |
open |
RFC 46: Cytoscape Layers Refactor |
2007-08-16 |
3.0 |
open |
RFC 45: Web Services Client Manager and Unified Network/Attribute Import Mechanism |
2007-08-15 |
2.6 |
being coded |
RFC 44: Build Process/Dependency Management |
2007-08-01 |
3.0 |
open |
RFC 43: Excentric Labeling in Cytoscape |
2007-07-26 |
2.x |
being coded |
RFC 42: Task Monitor Refactoring |
2007-07-26 |
3.0 |
open |
RFC 41: Consolidated Graph Analysis Plugin |
2007-07-24 |
2.x |
open |
RFC 40: Scripting in Cytoscape |
2007-07-24 |
3.0 |
open |
RFC 39: Data Integration/Web Services |
2007-07-19 |
2.x |
being coded |
RFC 38: Code Layering |
2007-07-18 |
3.0 |
open |
RFC 37: Attribute Namespaces |
2007-06-27 |
3.0 |
open |
RFC 36: Layout Improvement |
2007-06-26 |
2.5 |
closed |
RFC 35: Molecular Interaction Maps |
2006-10-10 |
3.0 |
open |
RFC 34: User Training Strategy |
2007-05-18 |
3.0 |
open |
RFC 33: Filters UI Redesign |
2007-04-25 |
2.6 |
being coded |
RFC 32: rich linetypes |
2007-04-22 |
3.0 |
open |
RFC 31: Implement local (per-network) attributes |
2007-04-22 |
3.0 |
open |
RFC 30: Making undirected edges first-class citizens |
2007-04-22 |
3.0 |
being coded |
RFC 29: Web services API for ID mapping/translator service |
2007-04-13 |
2.6 |
being coded |
RFC 28: Multilevel graph layout algorithm |
2007-02-15 |
2.6 |
being coded |
RFC 25: Bubble Router Plugin |
2007-01-19 |
2.6 |
being coded |
RFC 23: Cleaning up the import/export file menus |
2007-01-08 |
3.0 |
open |
RFC 21: User interface testing framework |
2006-10-31 |
3.0 |
open |
RFC 6: Cytoscape headless mode operation |
2006-01-27 |
3.0 |
open |
Completed RFCs
RFC 27: Plugin Web site and auto import |
2007-02-07 |
2.5 |
closed |
RFC 26: Performance Profiling |
2007-02-06 |
2.5 |
closed |
RFC 24: Visual Mapping GUI Redesign |
2006-01-10 |
2.5 |
closed |
RFC 22: Creating single instance webstarts |
2006-12-12 |
2.5 |
closed |
RFC 20: General Text/Excel file import framework |
2006-10-11 |
2.5 |
closed |
RFC 19: HyperEdge API |
2006-09-12 |
2.5 |
closed |
RFC 18: Group API (replaces RFC 8 and RFC 9) |
2006-08-16 |
2.5 |
closed |
RFC 17: Importable File Type |
2006-03-14 |
2.4 |
closed |
RFC 16: Text Table Network File Import |
2007-01-19? |
2.5 |
closed |
RFC 15: New Icon Set for Cytoscape 2.4 |
2006-07-19 |
2.4 |
closed |
RFC 14: Quick Find Feature |
2006-07-05 |
2.4 |
closed |
RFC 13: New Bio Data Server (Gene Ontology Server) |
2006-06-22 |
2.4 |
closed |
RFC 12: Fixing the loading and saving of the vizmap.props file |
2006-03-07 |
2.4 |
closed |
RFC 11: Cytoscape Undo Manager |
2006-01-26 |
2.5 |
closed |
RFC 10: Preferences initialization |
2006-03-22 |
2.4 |
closed |
RFC 9: Simplified MetaNode Data Structure |
2006-01-27 |
2.4 |
closed |
RFC 8: MetaNodes |
2006-01-18 |
2.4 |
closed |
RFC 7: Adding support for additional file types |
2006-03-14 |
2.4 |
closed |
RFC 5: Wiki clean-up |
2006-02-23 |
2.5 |
closed |
RFC 4: Java code license clean-up |
2006-02-16 |
2.4 |
closed |
RFC_3: Migrating the user manual to the wiki |
2005-12-25 |
2.4 |
closed |
RFC_2: Improving the quality of the Cytoscape 2.3 release |
2005-11-28 |
2.4 |
closed |
RFC_1: Migrating GraphObjAttributes to CyAttributes |
2005-09-30 |
2.3 |
closed |