RFC Name : ...

Editor(s): ...

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About this document

This is an official Request for Comment (RFC) for General text file import framework.

For details on RFCs in general, check out the Wikipedia Entry: Request for Comments (RFCs)

Status

10/11/2006 Still under construction.

How to Comment

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Try to keep your comments as concrete and constructive as possible. For example, if you find a part of the RFC makes no sense, please say so, but don't stop there. Take the extra step and propose alternatives.

Proposal

This RFC is for the new import framework for general text files.

Biological Questions / Use Cases

Most of biological data files are available in text or Microsoft Excel file format. By implementing this function, users can import following files:

General Notes

Requirements

This project contains two main components:

To provide maximm flexibility for users, the GUI should accept the following:

Deferred Items

Open Issues

The following is a prototype GUI for the file importer:

http://chianti.ucsd.edu/kono/images/fileImport1.png

Features requested in the Hackason (first 2 days of Cytoscape retreat 2006) were the following:

Backward Compatibility

Expected growth and plan for growth

References

Implementation Plan

Prototype readers and GUI is done.

Comments

I think it should be useful if the text table import could be done via pasting (clipboard). I imagine a menu item Edit->Paste As..-> attributes table. I expect it is just a matter of parsing a stream of space or tab delimited chars...

TextFileImport (last edited 2009-02-12 01:03:04 by localhost)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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