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Cytoscape is an open source platform for network data integration, analysis, and visualization. (Read more about Cytoscape...)
About Cytoscape Wiki
This is a wiki for both Cytoscape users and developers. If you find problems, or have suggestions, please let us know.
How to Edit
To edit wiki pages, sign up for an account, then add yourself to the editor list.
Quick Links
For Users
For Developers
code.cytoscape.org - Start page for core developers
- Javadoc
cytoscape.js - JavaScript library for web applications
Using Cytoscape
Manuals
Other Useful Links
- Tutorials
Publications about Cytoscape
Presentations about Cytoscape
Example data sets to use in Cytoscape
Developers
Cytoscape 3.x Development
Past Discussion about Cytoscape Architecture
Cytoscape 2.x Development
Attension App Developers: Cytoscape 2.x Series is in Maintenance Mode
If you are planning to develop a new Cytoscape App, we strongly recommend to use Cytoscape 3.x series. Cytoscpae core team is working on Cytoscape 3.x code base only and no new features will be added to 2.x series.
RFC_Index: Request for Comment (RFC) Index Page