Cytoscape Wiki|
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== Using Cytoscape == * [[Cytoscape_User_Manual|User Manual]]: Development draft * [[Data_Sets|Exampledata sets]] to use in Cytoscape |
---- == Quick Links == === For Users === * [[http://www.cytoscape.org/|Cytoscape Web Site]] * [[http://apps.cytoscape.org/|Cytoscape App Store]] * [[http://www.cytoscape.org/releasenotes.html|Release Notes]] * [[https://speakerdeck.com/cytoscape|Presentation Slides]] === For Developers === * [[http://code.cytoscape.org/|code.cytoscape.org]] - Start page for core developers * [[https://github.com/cytoscape|Cytoscape Consortium GitHub Account]] * Javadoc * [[http://chianti.ucsd.edu/cytoscape-3.0.1/API/|Latest Release: 3.0.1]] * [[https://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/lastBuild/javadoc/|Latest Development Version: 3.1.0-SNAPSHOT]] ---- == For Users == === Manual === * [[http://cytoscape.org/manual/Cytoscape2_8Manual.html|2.x]] * [[http://www.cytoscape.org/manual/Cytoscape3_0_1Manual.pdf|3.x]] * [[Data_Sets|Example data sets]] to use in Cytoscape |
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== Cytoscape 3 User Documents == * [[Cytoscape_3/UserManual|User Manual]]: 3.0.0 development draft |
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| == Developing Cytoscape == |
== For Developers == === Cytoscape 3.x Development === * [[Cytoscape_3|Cytoscape 3.x Development]] * [[Outdated_Cytoscape_3.0/Mini_Retreat2|Mini Retreat: March 4, 2011 at UCSD]] * [[Cytoscape_3/MiniRetreat2012|Mini Retreat: Feb. 23, 2012 at UCSD (Cytoscape 3 pre-release discussion)]] |
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=== Cytoscape 3 Development === * [[Cytoscape_3|Cytoscape 3.0 Development]] |
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* [[Outdated_Cytoscape_3.0/Mini_Retreat2|Mini Retreat: March 4, 2011 at UCSD]] * [[Cytoscape_3/MiniRetreat2012|Mini Retreat: Feb. 23, 2012 at UCSD (Cytoscape 3 pre-release discussion)]] == Testing Cytoscape == |
=== Testing Cytoscape === |
Cytoscape is an open source platform for network data integration, analysis, and visualization. (Read more about Cytoscape...)
About Cytoscape Wiki
This is a wiki for both Cytoscape users and developers. If you find problems, or have suggestions, please let us know.
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Quick Links
For Users
For Developers
code.cytoscape.org - Start page for core developers
- Javadoc
For Users
Manual
Example data sets to use in Cytoscape
Publications about Cytoscape
Presentations about Cytoscape
Recipes: Use case based plugin tutorials
For Developers
Cytoscape 3.x Development
Cytoscape 2.x Development
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