Cytoscape Wiki|
Size: 2007
Comment:
|
Size: 2872
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 8: | Line 8: |
|
== Introduction == [[http://www.cytoscape.org|{{attachment:cy3logo.png|http://cytoscape.org}}]] |
{{attachment:cy3logo.png|http://cytoscape.org}} |
| Line 11: | Line 10: |
| [[http://www.cytoscape.org|Cytoscape]] is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. | [[http://www.cytoscape.org|Cytoscape]] is an open source platform for network data integration, analysis, and visualization. ([[http://www.cytoscape.org/what_is_cytoscape.html|Read more about Cytoscape...]]) |
| Line 13: | Line 12: |
|
== About Cytoscape Wiki == This is a wiki for both Cytoscape users and developers. If you find problems, or have suggestions, [[https://groups.google.com/forum/?fromgroups#!forum/cytoscape-discuss|please let us know]]. === How to Edit === |
|
| Line 17: | Line 20: |
| ---- | |
| Line 18: | Line 22: |
|
== Using Cytoscape == * [[Cytoscape_User_Manual|User Manual]]: Development draft * [[Data_Sets|Exampledata sets]] to use in Cytoscape |
== Quick Links == === For Users === * [[http://www.cytoscape.org/|Cytoscape Web Site]] * [[http://apps.cytoscape.org/|Cytoscape App Store]] * [[http://www.cytoscape.org/releasenotes.html|Release Notes]] * [[https://speakerdeck.com/cytoscape|Presentation Slides]] === For Developers === * [[http://code.cytoscape.org/|code.cytoscape.org]] - Start page for core developers * [[https://github.com/cytoscape|Cytoscape Consortium GitHub Account]] * Javadoc * [[http://chianti.ucsd.edu/cytoscape-3.0.1/API/|Latest Release: 3.0.1]] * [[https://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/lastBuild/javadoc/|Latest Development Version: 3.1.0-SNAPSHOT]] ---- == For Users == === Manual === * [[http://cytoscape.org/manual/Cytoscape2_8Manual.html|2.x]] * [[http://www.cytoscape.org/manual/Cytoscape3_0_1Manual.pdf|3.x]] * [[Data_Sets|Example data sets]] to use in Cytoscape |
| Line 24: | Line 47: |
| Line 26: | Line 50: |
|
== Cytoscape 3 User Documents == * [[Cytoscape_3/UserManual|User Manual]]: 3.0.0 development draft |
|
| Line 29: | Line 51: |
| == Developing Cytoscape == |
== For Developers == === Cytoscape 3.x Development === * [[Cytoscape_3|Cytoscape 3.x Development]] * [[Outdated_Cytoscape_3.0/Mini_Retreat2|Mini Retreat: March 4, 2011 at UCSD]] * [[Cytoscape_3/MiniRetreat2012|Mini Retreat: Feb. 23, 2012 at UCSD (Cytoscape 3 pre-release discussion)]] |
| Line 38: | Line 67: |
|
=== Cytoscape 3 Development === * [[Cytoscape_3|Cytoscape 3.0 Development]] |
|
| Line 41: | Line 68: |
|
* [[Outdated_Cytoscape_3.0/Mini_Retreat2|Mini Retreat: March 4, 2011 at UCSD]] * [[Cytoscape_3/MiniRetreat2012|Mini Retreat: Feb. 23, 2012 at UCSD (Cytoscape 3 pre-release discussion)]] == Testing Cytoscape == |
=== Testing Cytoscape === |
Cytoscape is an open source platform for network data integration, analysis, and visualization. (Read more about Cytoscape...)
About Cytoscape Wiki
This is a wiki for both Cytoscape users and developers. If you find problems, or have suggestions, please let us know.
How to Edit
To edit wiki pages, sign up for an account, then add yourself to the editor list.
Quick Links
For Users
For Developers
code.cytoscape.org - Start page for core developers
- Javadoc
For Users
Manual
Example data sets to use in Cytoscape
Publications about Cytoscape
Presentations about Cytoscape
Recipes: Use case based plugin tutorials
For Developers
Cytoscape 3.x Development
Cytoscape 2.x Development
RFC_Index: Request for Comment (RFC) Index Page