Differences between revisions 59 and 61 (spanning 2 versions)
Revision 59 as of 2013-04-22 19:34:11
Size: 2007
Editor: KeiichiroOno
Comment:
Revision 61 as of 2013-04-26 19:39:06
Size: 2872
Editor: KeiichiroOno
Comment:
Deletions are marked like this. Additions are marked like this.
Line 8: Line 8:
== Introduction ==
[[http://www.cytoscape.org|
{{attachment:cy3logo.png|http://cytoscape.org}}]]
{{attachment:cy3logo.png|http://cytoscape.org}}
Line 11: Line 10:
[[http://www.cytoscape.org|Cytoscape]] is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. [[http://www.cytoscape.org|Cytoscape]] is an open source platform for network data integration, analysis, and visualization. ([[http://www.cytoscape.org/what_is_cytoscape.html|Read more about Cytoscape...]])
Line 13: Line 12:
== About Cytoscape Wiki ==
This is a wiki for both Cytoscape users and developers. If you find problems, or have suggestions, [[https://groups.google.com/forum/?fromgroups#!forum/cytoscape-discuss|please let us know]].

=== How to Edit ===
Line 17: Line 20:
----
Line 18: Line 22:
== Using Cytoscape ==
 * [[Cytoscape_User_Manual|User Manual]]: Development draft
 * [[Data_Sets|Exampledata sets]] to use in Cytoscape
== Quick Links ==
=== For Users ===
 * [[http://www.cytoscape.org/|Cytoscape Web Site]]
 * [[http://apps.cytoscape.org/|Cytoscape App Store]]
 * [[http://www.cytoscape.org/releasenotes.html|Release Notes]]
 * [[https://speakerdeck.com/cytoscape|Presentation Slides]]

=== For Developers ===
 * [[http://code.cytoscape.org/|code.cytoscape.org]] - Start page for core developers
 * [[https://github.com/cytoscape|Cytoscape Consortium GitHub Account]]
 * Javadoc
    * [[http://chianti.ucsd.edu/cytoscape-3.0.1/API/|Latest Release: 3.0.1]]
    * [[https://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/lastBuild/javadoc/|Latest Development Version: 3.1.0-SNAPSHOT]]

----

== For Users ==
=== Manual ===
 * [[http://cytoscape.org/manual/Cytoscape2_8Manual.html|2.x]]
 * [[http://www.cytoscape.org/manual/Cytoscape3_0_1Manual.pdf|3.x]]

 * [[Data_Sets|Example data sets]] to use in Cytoscape
Line 24: Line 47:
Line 26: Line 50:
== Cytoscape 3 User Documents ==
 * [[Cytoscape_3/UserManual|User Manual]]: 3.0.0 development draft
Line 29: Line 51:
== Developing Cytoscape == == For Developers ==

=== Cytoscape 3.x Development ===
 * [[Cytoscape_3|Cytoscape 3.x Development]]

 * [[Outdated_Cytoscape_3.0/Mini_Retreat2|Mini Retreat: March 4, 2011 at UCSD]]
 * [[Cytoscape_3/MiniRetreat2012|Mini Retreat: Feb. 23, 2012 at UCSD (Cytoscape 3 pre-release discussion)]]
Line 38: Line 67:
=== Cytoscape 3 Development ===
 * [[Cytoscape_3|Cytoscape 3.0 Development]]
Line 41: Line 68:
 * [[Outdated_Cytoscape_3.0/Mini_Retreat2|Mini Retreat: March 4, 2011 at UCSD]]
 * [[Cytoscape_3/MiniRetreat2012|Mini Retreat: Feb. 23, 2012 at UCSD (Cytoscape 3 pre-release discussion)]]

== Testing Cytoscape ==
=== Testing Cytoscape ===

http://cytoscape.org

Cytoscape is an open source platform for network data integration, analysis, and visualization. (Read more about Cytoscape...)

About Cytoscape Wiki

This is a wiki for both Cytoscape users and developers. If you find problems, or have suggestions, please let us know.

How to Edit


For Users

For Developers


For Users

Manual

For Developers

Cytoscape 3.x Development

Cytoscape 2.x Development

Testing Cytoscape

Welcome (last edited 2016-04-26 22:30:33 by server2)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

MoinMoin Appliance - Powered by TurnKey Linux