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Introduction
Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data.
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Using Cytoscape
User Manual: Development draft
Exampledata sets to use in Cytoscape
Publications about Cytoscape
Presentations about Cytoscape
Recipes: Use case based plugin tutorials
Developing Cytoscape
Cytoscape 2.x Development
RFC_Index: Request for Comment (RFC) Index Page
Cytoscape 3 Development