Diff for "Welcome" - Cytoscape Wiki

Differences between revisions 54 and 60 (spanning 6 versions)

Cytoscape is an open source platform for network data integration, analysis, and visualization. (Read more about Cytoscape...)

About Cytoscape Wiki

This is a wiki for both Cytoscape users and developers. If you find problems, or have suggestions, please let us know.

How to Edit

To edit wiki pages, sign up for an account, then add yourself to the editor list.
Tips for editing
See all pages in this wiki

Using Cytoscape

User Manual: Development draft
Exampledata sets to use in Cytoscape
Publications about Cytoscape
Presentations about Cytoscape
Recipes: Use case based plugin tutorials
Other network analysis links

Cytoscape 3 User Documents

User Manual: 3.0.0 development draft

Developing Cytoscape

Cytoscape 2.x Development

Participate in Cytoscape Development
Building_Cytoscape
Plugin Developer's Documents
Future_Cytoscape_Features
RFC_Index: Request for Comment (RFC) Index Page
Core Development Pages
- Newly started Cytoscape 3 documentation
- Outdated Cytoscape 3.0 pages, partly describing the 3.0-development process
- Cytoscape_2.7
- Cytoscape_2.6
- Cytoscape_2.5
- Google Summer of Code 2009: Ideas page for our GSoC application
- CytoscapeRetreat2010
- Hackathon Oct '09
- Mini Retreat Jun '10

Cytoscape 3 Development

Testing Cytoscape

Master Test Plan

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-== Introduction ==

[[http://cytoscape.org|{{attachment:logo_small.gif|http://cytoscape.org}}]]
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-[[http://www.cytoscape.org|Cytoscape]] is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data.
+[[http://www.cytoscape.org|{{attachment:cy3logo.png|http://cytoscape.org}}]]
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+[[http://www.cytoscape.org|Cytoscape]] is an open source platform for network data integration, analysis, and visualization.  ([[http://www.cytoscape.org/what_is_cytoscape.html|Read more about Cytoscape...]])



== About Cytoscape Wiki ==

This is a wiki for both Cytoscape users and developers.  If you find problems, or have suggestions, [[https://groups.google.com/forum/?fromgroups#!forum/cytoscape-discuss|please let us know]].



=== How to Edit ===

 * To edit wiki pages, [[http://www.cytoscape.org/cgi-bin/moin.cgi/?action=newaccount|sign up for an account]], then add yourself to the [[EditorGroup|editor list]].
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-Note: To edit wiki pages, [[http://www.cytoscape.org/cgi-bin/moin.cgi/?action=newaccount|sign up for an account]], then add yourself to the [[EditorGroup|editor list]].
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+== Cytoscape 3 User Documents ==

 * [[Cytoscape_3/UserManual|User Manual]]: 3.0.0 development draft
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+=== Cytoscape 2.x Development ===
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+=== Cytoscape 3 Development ===

 * [[Cytoscape_3|Cytoscape 3.0 Development]]
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