Cytoscape Wiki|
← Revision 3 as of 2006-11-21 22:14:17
Size: 2764
Comment: Added information on importance
|
← Revision 4 as of 2007-05-30 21:36:23 →
Size: 2980
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 58: | Line 58: |
|
[[PageComment2]] |
---- AllanKuchinsky - 2007-01-23 04:39:32 This is similar to the first neighbors functionality in Cytoscape (Select -> Mouse Drag Selects -> Nodes -> First Neighbors of Selected Nodes). Should be straightforward to implement. |
Use Case Name : ../PathBranching |
For Feature : MIMEditor |
Editors: DavidKane |
Summary
User wants to compactly layout many contigency relationships for the same species
Step-by-Step User Action
User specifies a contigency relationship (e.g. ../ProcessStimulation, ../ShowInhibition)
- User specifies a second contigency relationship of the same type with the same species origin
- User joins the two relationships with a branch
- User moves the branch point to a convenient location
Visual Aides
The following example has several branches, but the clearest are the several ../EnzymaticStimulation relationships from ATM. Instead of four edges going from ATM to the four species it stimulates, there is one edge that branches three times.
attachment:pathbranching1_061120_dwk.png
Requirements for Cytoscape
TBD
Importance
This important for keeping the diagrams from becoming too cluttered.
Other Examples
Comments
Shared ../MimEditorUseCaseComments
BioPax representation TBD
AllanKuchinsky - 2007-01-23 04:39:32
This is similar to the first neighbors functionality in Cytoscape (Select -> Mouse Drag Selects -> Nodes -> First Neighbors of Selected Nodes). Should be straightforward to implement.