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== RFC Template ==
Creating a new RFC? Use the ["RFC_Template"] and add a link to table below.
Line 6: Line 9:
 * ["RFC 1"]: Migrating !GraphObjAttributes to !CyAttributes
 * ["RFC 2"]: Improving the quality of the Cytoscape 2.3 release
 * ["RFC 3"]: Migrating the user manual to the wiki
 * [:License clean-up RFC:RFC 4]: Java code license clean-up
 * [:Wiki clean-up RFC:RFC 5]: Wiki clean-up
 * [:HeadlessModeRFC:RFC 6]: Cytoscape headless mode operation
 * [:ImportableFileTypeRFC:RFC 7]: Adding support for additional file types
 * [:MetaNodes RFC:RFC 8]: !MetaNodes
 * [:SimplifiedMetaNodeDataStructureRFC:RFC 9]: Simplified !MetaNode Data Structure
 * [:PreferenceInitializationRFC:RFC 10]: Preferences initialization
 * [:UndoManager RFC:RFC 11]: Cytoscape Undo Manager
 * [:VizMapPropsRFC:RFC 12]: Fixing the loading and saving of the vizmap.props file
 * [:BioDataServerRFC:RFC 13]: New Bio Data Server (Gene Ontology Server)
 * [:QuickFindRFC:RFC 14]: Quick Find Feature
 * [:CytoscapeIcons:RFC 15]: New Icon Set for Cytoscape 2.4
 * [:SimpleTextTableImport:RFC 16]: Text Table Network File Import
 * [:ImportableFileTypeRFC:RFC 17]: Importable File Type
 * [:groupAPI:RFC 18]: Group API (replaces RFC 8 and RFC 9)
 * [:HyperEdgeAPI:RFC 19]: Hyper''''''Edge API
 * [:TextFileImport:RFC 20]: General Text/Excel file import framework
 * [:GuiTesting:RFC 21]: User interface testing framework
 * [:SingleInstanceWebstart:RFC 22]: Creating single instance webstarts
 * [:ImportExportMenus:RFC 23]: Cleaning up the import/export file menus
 * [:NewVizMapper:RFC 24]: VizMapper GUI Redesign
 * Please add your next RFC here...
== RFC Template ==
Creating a new RFC? Use the: RfcTemplate
|| '''Name of RFC'''||'''Date of RFC Creation'''||
|| ''Please add your next RFC here...'' || ''... and the date''||
|| [:CytoService: RFC 53]: SubgeneViewer: Cytoscape from Service Provider Perspective|| 2007-10-23 ||
|| [:EventHandling: RFC 52]: Event Handling System || 2007-10-23 ||
|| [:CytoscapeProject: RFC 51]: Cytoscape Projects || 2007-10-23 ||
|| [:TaskManagement: RFC 50]: Task Management || 2007-10-17 ||
|| [:GroupViews: RFC 49]: Viewing groups || 2007-09-26 ||
|| [:CytoscapePluginBundles: RFC 48]: Plugin Bundles || 2007-09-13 ||
|| [:PluginRefactor: RFC 47]: Plugin Interface Refactor || 2007-08-24 ||
|| [:CytoscapeLayerRefactor: RFC 46]: Cytoscape Layers Refactor || 2007-08-16 ||
|| [:BioWebServiceConnectivity:RFC 45]: Web Services Client Manager and Unified Network/Attribute Import Mechanism || 2007-08-15 ||
|| [:DependencyManagement:RFC 44]: Build Process/Dependency Management || 2007-08-01 ||
|| [:ExcentricLabelRFC:RFC 43]: Excentric Labeling in Cytoscape || 2007-07-26 ||
|| [:TaskMonitorRefactoring:RFC 42]: Task Monitor Refactoring || 2007-07-26 ||
|| [:Consolidated_graph_analysis_plugin:RFC 41]: Consolicated Graph Analysis Plugin || 2007-07-24 ||
|| [:Scripting:RFC 40]: Scripting in Cytoscape || 2007-07-24 ||
|| [:DataIntegration:RFC 39]: Data Integration/Web Services || 2007-07-19 ||
|| [:CodeLayering:RFC 38]: Code Layering || 2007-07-18 ||
|| [:AttributeNamespaces:RFC 37]: Attribute Namespaces || 2007-06-27 ||
|| [:LayoutImprovement:RFC 36]: Layout Improvement || 2007-06-26 ||
|| [:Molecular Interaction Maps:RFC 35]: Molecular Interaction Maps || 2006-10-10 ||
|| [:UserTraining: RFC 34]: User Training Strategy || 2007-05-18 ||
|| [:Filters_UI_Redesign:RFC 33]: Filters UI Redesign || 2007-04-25 ||
|| [:RichLineTypes:RFC 32]: rich linetypes || 2007-04-22 ||
|| [:LocalAttributes:RFC 31]: Implement local (per-network) attributes || 2007-04-22 ||
|| [:UndirectedEdges:RFC 30]: Making undirected edges first-class citizens || 2007-04-22 ||
|| [:WebServicesIDMapping:RFC 29]: Web services API for ID mapping/translator service || 2007-04-13 ||
|| [:MultilevelLayout:RFC 28]: Multilevel graph layout algorithm || 2007-02-15 ||
|| [:Pluginwebsite:RFC 27]: Plugin Web site and auto import || 2007-02-07 ||
|| [:PerformanceProfilingRFC:RFC 26]: Performance Profiling || 2007-02-06 ||
|| [:BubbleRouterRFC:RFC 25]: Bubble Router Plugin || 2007-01-19 ||
|| [:VizMapUI:RFC 24]: Visual Mapping GUI Redesign || 2006-01-10 ||
|| [:ImportExportMenus:RFC 23]: Cleaning up the import/export file menus || 2007-01-08 ||
|| [:SingleInstanceWebstart:RFC 22]: Creating single instance webstarts || 2006-12-12 ||
|| [:GuiTesting:RFC 21]: User interface testing framework || 2006-10-31 ||
|| [:TextFileImport:RFC 20]: General Text/Excel file import framework || 2006-10-11 ||
|| [:HyperEdgeAPI:RFC 19]: Hyper''''''Edge API || 2006-09-12 ||
|| [:groupAPI:RFC 18]: Group API (replaces RFC 8 and RFC 9) || 2006-08-16 ||
|| [:ImportableFileTypeRFC:RFC 17]: Importable File Type || 2006-03-14 ||
|| [:SimpleTextTableImport:RFC 16]: Text Table Network File Import || 2007-01-19? ||
|| [:CytoscapeIcons:RFC 15]: New Icon Set for Cytoscape 2.4 || 2006-07-19 ||
|| [:QuickFindRFC:RFC 14]: Quick Find Feature || 2006-07-05 ||
|| [:BioDataServerRFC:RFC 13]: New Bio Data Server (Gene Ontology Server) || 2006-06-22 ||
|| [:VizMapPropsRFC:RFC 12]: Fixing the loading and saving of the vizmap.props file || 2006-03-07 ||
|| [:UndoManager RFC:RFC 11]: Cytoscape Undo Manager || 2006-01-26 ||
|| [:PreferenceInitializationRFC:RFC 10]: Preferences initialization || 2006-03-22 ||
|| [:SimplifiedMetaNodeDataStructureRFC:RFC 9]: Simplified !MetaNode Data Structure || 2006-01-27 ||
|| [:MetaNodes RFC:RFC 8]: !MetaNodes || 2006-01-18 ||
|| [:ImportableFileTypeRFC:RFC 7]: Adding support for additional file types || 2006-03-14 ||
|| [:HeadlessModeRFC:RFC 6]: Cytoscape headless mode operation || 2006-01-27 ||
|| [:Wiki clean-up RFC:RFC 5]: Wiki clean-up || 2006-02-23 ||
|| [:License clean-up RFC:RFC 4]: Java code license clean-up || 2006-02-16 ||
|| ["RFC 3"]: Migrating the user manual to the wiki || 2005-12-25 ||
|| ["RFC 2"]: Improving the quality of the Cytoscape 2.3 release || 2005-11-28 ||
|| ["RFC 1"]: Migrating !GraphObjAttributes to !CyAttributes || 2005-09-30 ||

Request for Comments (RFCs)

About RFCs

RFCs represent one possible mechanism for soliciting feedback for core Cytoscape features / refactoring. For details on RFCs in general, check out the [http://www.answers.com/main/ntquery?method=4&dsid=2222&dekey=Request+for+Comments&gwp=8&curtab=2222_1&linktext=Request%20for%20Comments Wikipedia Entry: Request for Comments (RFCs)]

RFC Template

Creating a new RFC? Use the ["RFC_Template"] and add a link to table below.

RFC Index

Name of RFC

Date of RFC Creation

Please add your next RFC here...

... and the date

[:CytoService: RFC 53]: SubgeneViewer: Cytoscape from Service Provider Perspective

2007-10-23

|| [:EventHandling: RFC 52]: Event Handling System || 2007-10-23 ||

[:CytoscapeProject: RFC 51]: Cytoscape Projects

2007-10-23

[:TaskManagement: RFC 50]: Task Management

2007-10-17

[:GroupViews: RFC 49]: Viewing groups

2007-09-26

[:CytoscapePluginBundles: RFC 48]: Plugin Bundles

2007-09-13

[:PluginRefactor: RFC 47]: Plugin Interface Refactor

2007-08-24

[:CytoscapeLayerRefactor: RFC 46]: Cytoscape Layers Refactor

2007-08-16

[:BioWebServiceConnectivity:RFC 45]: Web Services Client Manager and Unified Network/Attribute Import Mechanism

2007-08-15

[:DependencyManagement:RFC 44]: Build Process/Dependency Management

2007-08-01

[:ExcentricLabelRFC:RFC 43]: Excentric Labeling in Cytoscape

2007-07-26

[:TaskMonitorRefactoring:RFC 42]: Task Monitor Refactoring

2007-07-26

[:Consolidated_graph_analysis_plugin:RFC 41]: Consolicated Graph Analysis Plugin

2007-07-24

[:Scripting:RFC 40]: Scripting in Cytoscape

2007-07-24

[:DataIntegration:RFC 39]: Data Integration/Web Services

2007-07-19

[:CodeLayering:RFC 38]: Code Layering

2007-07-18

[:AttributeNamespaces:RFC 37]: Attribute Namespaces

2007-06-27

[:LayoutImprovement:RFC 36]: Layout Improvement

2007-06-26

[:Molecular Interaction Maps:RFC 35]: Molecular Interaction Maps

2006-10-10

[:UserTraining: RFC 34]: User Training Strategy

2007-05-18

[:Filters_UI_Redesign:RFC 33]: Filters UI Redesign

2007-04-25

[:RichLineTypes:RFC 32]: rich linetypes

2007-04-22

[:LocalAttributes:RFC 31]: Implement local (per-network) attributes

2007-04-22

[:UndirectedEdges:RFC 30]: Making undirected edges first-class citizens

2007-04-22

[:WebServicesIDMapping:RFC 29]: Web services API for ID mapping/translator service

2007-04-13

[:MultilevelLayout:RFC 28]: Multilevel graph layout algorithm

2007-02-15

[:Pluginwebsite:RFC 27]: Plugin Web site and auto import

2007-02-07

[:PerformanceProfilingRFC:RFC 26]: Performance Profiling

2007-02-06

[:BubbleRouterRFC:RFC 25]: Bubble Router Plugin

2007-01-19

[:VizMapUI:RFC 24]: Visual Mapping GUI Redesign

2006-01-10

[:ImportExportMenus:RFC 23]: Cleaning up the import/export file menus

2007-01-08

[:SingleInstanceWebstart:RFC 22]: Creating single instance webstarts

2006-12-12

[:GuiTesting:RFC 21]: User interface testing framework

2006-10-31

[:TextFileImport:RFC 20]: General Text/Excel file import framework

2006-10-11

[:HyperEdgeAPI:RFC 19]: HyperEdge API

2006-09-12

[:groupAPI:RFC 18]: Group API (replaces RFC 8 and RFC 9)

2006-08-16

[:ImportableFileTypeRFC:RFC 17]: Importable File Type

2006-03-14

[:SimpleTextTableImport:RFC 16]: Text Table Network File Import

2007-01-19?

[:CytoscapeIcons:RFC 15]: New Icon Set for Cytoscape 2.4

2006-07-19

[:QuickFindRFC:RFC 14]: Quick Find Feature

2006-07-05

[:BioDataServerRFC:RFC 13]: New Bio Data Server (Gene Ontology Server)

2006-06-22

[:VizMapPropsRFC:RFC 12]: Fixing the loading and saving of the vizmap.props file

2006-03-07

[:UndoManager RFC 11]: Cytoscape Undo Manager

2006-01-26

[:PreferenceInitializationRFC:RFC 10]: Preferences initialization

2006-03-22

[:SimplifiedMetaNodeDataStructureRFC:RFC 9]: Simplified MetaNode Data Structure

2006-01-27

[:MetaNodes RFC 8]: MetaNodes

2006-01-18

[:ImportableFileTypeRFC:RFC 7]: Adding support for additional file types

2006-03-14

[:HeadlessModeRFC:RFC 6]: Cytoscape headless mode operation

2006-01-27

[:Wiki clean-up RFC 5]: Wiki clean-up

2006-02-23

[:License clean-up RFC 4]: Java code license clean-up

2006-02-16

["RFC 3"]: Migrating the user manual to the wiki

2005-12-25

["RFC 2"]: Improving the quality of the Cytoscape 2.3 release

2005-11-28

["RFC 1"]: Migrating GraphObjAttributes to CyAttributes

2005-09-30

RFC_Index (last edited 2015-06-05 00:20:36 by bdemchak)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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