Cytoscape 3.0 TODO List

coreplugins

• attr browser
• layouts
• biopax
• cpath
• editor
• filters
• quickfind
• linkout
• manual layout
• merge
• ontology import
• sbml import
• table import
• psi-mi import
• webservice

application

• reconfigure remaining actions as Tasks and get them working (printing, etc.)
• extract session related code
• tidy up remaining static classes
• get preferences organized
• hook up p2 provisioning system

session-api

• extract from application
• figure out a way for Swing application to save its state to session

ding-presentation-impl

• Activate all visual properties (node shapes, arrow shapes, etc.)
• determine if any interfaces should be exported
• Clean up code for performance
• get birds eye view disposing correctly
• trigger proper events for node selection, etc.

io-impl

• get XGMML working with new visual properties
• get GML working with new visual properties
• get session loading working
• make sure legacy sessions work
• get export working

model-impl

• resolve event firing questions

viewmodel-api

• resolve column oriented vs. row oriented
• get rid of "set" code

work-swing-impl

• debug and clean up various guis

work-tunable-props-impl

• make sure we can load and save tunables as properties

Other

• Write unit tests
• Write performance tests
• Get automated builds working
• Figure out distribution
• Figure out javadoc/site deployment
• Plan "Cytoscape Commons" and figure out how to support 3rd party plugin developers
• Developer documentation and HOWTOs