Differences between revisions 1 and 3 (spanning 2 versions)

Quick Start Guide for Cytoscape 3 Developers

Introduction

This is a quick guide how to checkout and run the Cytoscape 3.0 GUI application.

You need the following tools on your machine.

First, you need to check out Cytoscape 3 GUI distribution bundle:

% svn co http://chianti.ucsd.edu/svn/core3/gui-distribution/trunk/ gui-distribution

% cd gui-distribution
% mvn clean install

% cd distribution/target/cytoscape-${version}-null.dir/cytoscape-${version}
% cytoscape.sh

Outdated_Cytoscape_3.0/Developer/QuickStart (last edited 2011-02-24 15:34:15 by PietMolenaar)

-  ← Revision 1 as of 2009-03-13 18:53:45 →
  Size: 674
  Editor: KeiichiroOno
  Comment:
+  ← Revision 3 as of 2011-02-08 23:54:48 →
  Size: 689
  Editor: alsace
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
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-(Under construction!)
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-This is a quick guide how to compile and run Cytoscape 3 application with Maven.
+This is a quick guide how to checkout and run the Cytoscape 3.0 GUI application.
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- * JDK 5 or 6
+ * JDK 6
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-First, you need to check out Cytoscape 3.
+First, you need to check out Cytoscape 3 GUI distribution bundle:



{{{

% svn co http://chianti.ucsd.edu/svn/core3/gui-distribution/trunk/ gui-distribution

}}}
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-mvn clean install
+% cd gui-distribution

% mvn clean install
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+Line 29:
-{{{

mvn pax:run

}}}



If you want to see the log messages from infrastructure bundles (such as message from Spring DM or Felix), you can add the following option
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-mvn pax:run "-Dprofiles=log"
+% cd distribution/target/cytoscape-${version}-null.dir/cytoscape-${version}

% cytoscape.sh