Quick Start Guide for Cytoscape 3 Developers


This is a quick guide how to checkout and run the Cytoscape 3.0 GUI application.


You need the following tools on your machine.


Checkout code from SVN

First, you need to check out Cytoscape 3 GUI distribution bundle:

% svn co http://chianti.ucsd.edu/svn/core3/gui-distribution/trunk/ gui-distribution


% cd gui-distribution
% mvn clean install

Run Application

% cd distribution/target/cytoscape-${version}-null.dir/cytoscape-${version}
% cytoscape.sh

Outdated_Cytoscape_3.0/Developer/QuickStart (last edited 2011-02-24 15:34:15 by PietMolenaar)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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