EmblHeidelbergCytoscapeCourseSept2010 - Cytoscape Wiki

Slides:
- EMBLCytoscapeWorkshop-Part1-Sep2010.pptx - PowerPoint format
- EMBLHeidelbergCytoscapeCourse.pdf - PDF format
- EMBLCytoscapeWorkshop-Part2-Dev-Sep2010.ppt - PowerPoint format
Introductory Cytoscape tutorial: http://opentutorials.rbvi.ucsf.edu/index.php/Tutorial:Introduction_to_Cytoscape
- To follow during the first lab
Collaborative course notes: https://docs.google.com/document/edit?id=117SJMdDmaih39iBLCrFIvwvPuDS5z6_tztnVYJZb3rM&hl=en&authkey=CJKno5oC
- Have anything to share with others in the course? Feel free to add it to this document.
Background reading:
Multiple Testing Correction tutorial
- http://www.silicongenetics.com/Support/GeneSpring/GSnotes/analysis_guides/mtc.pdf
Some interesting networks made with cytoscape
- Genetic landscape of the cell, BooneLab, (Sciencepaper: http://www.ncbi.nlm.nih.gov/pubmed/20093466)
Additional datafiles
- Gene knockout timeseries
- Sample src for TimeSeriesPlugin (note, to have it working needs a database, serves as sample code only)
Cytoscape source code
- http://chianti.ucsd.edu/svn/

EmblHeidelbergCytoscapeCourseSept2010 (last edited 2010-10-11 08:34:05 by PietMolenaar)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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