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'''This is a preliminary set-up for the retreat 2007. Consider it a kind of RFC for the coming month or so; any suggestions changes are welcome! The only date that's pretty much fixed is the symposium date; than is the only time a big conference room is available. In the current scenario (CytoRetreat2007Planning : due in a few days) a first announcement will be sent at the beginning of april; so that should be the end of RFC status.''' |
'''This set of pages will from now on serve as the central site for the organization of the retreat. During the retreat this will also serve as starting point for notes, planning etc. The actual announcement site (now under construction) will come directly under the Cytoscape site; much like the tutorial pages are organized.''' |
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| The 5th Annual Cytoscape Retreat will be held November 6th - 9th, 2006 (Tue-Fri) at the [http://www.amc.nl/ Academic Medical Center] of the University of Amsterdam in the Netherlands. [http://maps.google.com/maps?f=q&hl=en&q=Academisch+Medisch+Centrum,+Amsterdam,+North+Holland,+Netherlands&ie=UTF8&sll=52.373922,4.958954&sspn=0.178998,0.466919&z=11&ll=52.32275,4.957581&spn=0.179205,0.692139&om=1&iwloc=addr map] | The budget is stored as an excel sheet: attachment:CytoBudget.xls |
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| Cytoscape is jointly developed by the groups of Benno Schwikowski (Pasteur Institute, Paris), Trey Ideker (University of California San Diego), Chris Sander (Memorial Sloan-Kettering Cancer Center), Lee Hood (Institute of Systems Biology, Seattle), and Annette Adler (Agilent Technologies, Santa Clara, CA). This year the retreat will be co-hosted by two new contributor groups of Tom Ferrin (UCSF Computer Graphics Laboratory) and Bruce Conklin (Gladstone/UCSF, GenMAPP). | Planning is a separate wiki page''' CytoRetreat2007Planning ''' |
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| The meeting will mainly be informal and technically focused with all major Cytoscape team members gathered together to set new directions for Cytoscape, plan new features and collaboratively work on code. Cytoscape-related presentations by invitees are welcome. Social activities around the meeting are also scheduled. This is a great chance to influence the development direction of Cytoscape. |
---- '''Speakers for Public Symposium:''' |
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== Preliminary Schedule == ||<rowbgcolor="#ffeeaa">'''MON November 5th''' ||'''Meet and greet'''|| ||<rowbgcolor="#ffcc99">'''Where''' ||Somewhere in Amsterdam || ||5:00PM-7:00PM ||Meet and greet in bar || ||7:00 PM-(...) ||Dinner on own but together ;-)|| ||<rowbgcolor="#ffeeaa">'''TUE November 6th''' ||'''Hackathon'''|| ||<rowbgcolor="#ffcc99">'''Where''' ||AMC Lectureroom K 01-123 || ||9:30-11:00||Defining issues and breakout groups|| ||11:00-11:30||Coffee break|| ||11:30-12:30||Hacking/Coding in breakout groups|| ||12:30-14:00||Lunch|| ||14:00-15:30||Hacking/Coding in breakout groups|| ||15:30-16:00 ||Coffee and tea break|| ||16:00-17:00 ||Results session|| ||17:00-(...)||Hackathon Extension; things todo in Amsterdam|| ||<rowbgcolor="#ffeeaa">'''WED November 7th''' ||'''Demoday''' ''Application showcase and hands-on sessions''|| ||<rowbgcolor="#ffcc99">'''Where''' ||AMC Lecturerooms K 01-123 and -122 ; parallel sessions|| ||9:30-11:00||Application showcase 1A / Hands-on session 1A|| ||11:00-11:30||Coffee break|| ||11:30-12:30||Application showcase 1B / Hands-on session 1B|| ||12:30-14:00||Lunch|| ||14:00-15:30||Hands-on session 2A/Application showcase 2A|| ||15:30-16:00 ||Coffee and tea break|| ||16:00-17:00 ||Hands-on session 2B/Application showcase 2B|| ||17:00-(...)||Hackathon Extension; things todo in Amsterdam|| ||18:00-(...)||SAB & Board of Directors Meeting|| ||<rowbgcolor="#ffeeaa">'''THU November 8th''' ||'''Public Symposium''' ''Cytoscape: Network-Based Approaches to Biological Data Integration and Analysis''|| ||<rowbgcolor="#ffcc99">'''Where''' ||AMC Conference Room 5 || ||9:15-9:30||Opening|| ||9:30-10:15||Speaker 1|| ||10:15-11:00||Speaker 2|| ||11:00-11:30||Coffee break|| ||11:30-12:00||Speaker 3|| ||12:00-12:30||Speaker 4|| ||12:30-14:00||Lunch|| ||14:00-14:45||Speaker 5|| ||14:45-15:30||Speaker 6|| ||15:30-16:00 ||Coffee and tea break|| ||16:00-16:30 ||Speaker 7|| ||16:30-17:00 ||Speaker 8|| ||19:00-(...)||Conference Dinner|| ||<rowbgcolor="#ffeeaa">'''FRI November 9th''' ||'''Roadmap''' ''Defined by devteam''|| ||<rowbgcolor="#ffcc99">'''Where''' ||AMC Lecturerooms K 01-123 || ||9:30|| Cytoscape 2.5 rundown|| ||10:30|| Organize Major Development Tasks and BreakoutGroups || ||12:30|| Working Lunch|| ||13:00|| BreakoutGroups Report || ||13:00|| Parallel session of Board of Directors and SAB to discuss vision|| ||15:00||Work on RoadMap2007 / Match Core Developers to Action Items|| ||17:00||Wrap-up: SAB Input, Board Issues & Future Vision || ||18:45-(...)||Things todo in Amsterdam|| == Registration == To be done ----- == Location == To be done ----- == Hotel Suggestions == To be done ----- == Travel == To be done ----- == Example Trip Planner == To be done ----- == Amsterdam tourism == To be done |
'''Confirmed:''' * Leroy Hood –Institute of Systems Biology * Ewan Birney – European Institute for Bioinformatics * Peter Sorger – Harvard University * Trey Ideker – University of California, San Diego * Chris Sander – Memorial-Sloan-Kettering Cancer Centre * Benno Schwikowski – Institut Pastuer |
Cytoscape Retreat 2007
Amsterdam; the Netherlands - November 6th - 9th, 2007
This set of pages will from now on serve as the central site for the organization of the retreat. During the retreat this will also serve as starting point for notes, planning etc. The actual announcement site (now under construction) will come directly under the Cytoscape site; much like the tutorial pages are organized.
The budget is stored as an excel sheet: attachment:CytoBudget.xls
Planning is a separate wiki page CytoRetreat2007Planning
Speakers for Public Symposium:
Confirmed:
- Leroy Hood –Institute of Systems Biology
- Ewan Birney – European Institute for Bioinformatics
- Peter Sorger – Harvard University
- Trey Ideker – University of California, San Diego
- Chris Sander – Memorial-Sloan-Kettering Cancer Centre
- Benno Schwikowski – Institut Pastuer