attachment:matrix.rb of ScriptingPlugins

Attachment 'matrix.rb'

   1 require 'java'
   2 
   3 include_class 'cytoscape.Cytoscape'
   4 include_class 'cytoscape.CyNetwork'
   5 include_class 'cytoscape.CyNode'
   6 
   7 net = Cytoscape.getCurrentNetwork
   8 source =  net.nodesList
   9 
  10 line = ','
  11 source.each do |column|
  12   line << column.getIdentifier << ','
  13 end
  14 
  15 fileName = net.getTitle + "_matrix.csv"
  16 File.open(fileName, "w") {|file|
  17 
  18   file.puts line
  19   
  20   source.each do |s|
  21     line = s.getIdentifier + ','
  22     targets = net.nodesList
  23     targets.each do |t|
  24       if net.edgeExists(s, t)
  25         line << '1,'
  26       else
  27         line << '0,'
  28       end
  29     end
  30     file.puts line
  31   end
  32 }
  33 

Attached Files

• [get | view] (2011-10-20 20:44:43, 1.7 KB) [[attachment:ba_model.py]]
• [get | view] (2011-10-20 20:44:43, 1.4 KB) [[attachment:ba_model_generator.rb]]
• [get | view] (2011-10-20 20:44:43, 0.6 KB) [[attachment:complete_graph.js]]
• [get | view] (2011-10-20 20:44:43, 0.9 KB) [[attachment:dialog.js]]
• [get | view] (2011-10-20 20:44:43, 64.3 KB) [[attachment:groovyEngine1.png]]
• [get | view] (2011-10-20 20:44:43, 0.2 KB) [[attachment:hello_cytoscape.js]]
• [get | view] (2011-10-20 20:44:43, 0.2 KB) [[attachment:hello_cytoscape.rb]]
• [get | view] (2011-10-20 20:44:43, 5.7 KB) [[attachment:javascriptSample1.png]]
• [get | view] (2011-10-20 20:44:43, 291.8 KB) [[attachment:javascriptSample2.png]]
• [get | view] (2011-10-20 20:44:43, 70.6 KB) [[attachment:javascriptSample3.png]]
• [get | view] (2011-10-20 20:44:43, 59.0 KB) [[attachment:javascriptSample4.png]]
• [get | view] (2011-10-20 20:44:43, 1.7 KB) [[attachment:kegg_sample1.rb]]
• [get | view] (2011-10-20 20:44:43, 0.4 KB) [[attachment:load_multiple_networks.rb]]
• [get | view] (2011-10-20 20:44:43, 0.6 KB) [[attachment:matrix.rb]]
• [get | view] (2011-10-20 20:44:43, 5.4 KB) [[attachment:matrix1.png]]
• [get | view] (2011-10-20 20:44:43, 49.2 KB) [[attachment:pythonEngine1.png]]
• [get | view] (2011-10-20 20:44:43, 286.7 KB) [[attachment:pythonEngine2.png]]
• [get | view] (2011-10-20 20:44:43, 116.9 KB) [[attachment:rubyConsole1.png]]
• [get | view] (2011-10-20 20:44:43, 64.2 KB) [[attachment:rubyConsole2.png]]
• [get | view] (2011-10-20 20:44:43, 19.6 KB) [[attachment:rubyEngine.png]]
• [get | view] (2011-10-20 20:44:43, 12.1 KB) [[attachment:rubySample1.png]]
• [get | view] (2011-10-20 20:44:43, 136.9 KB) [[attachment:rubySample2.png]]
• [get | view] (2011-10-20 20:44:43, 194.9 KB) [[attachment:rubySample3.png]]
• [get | view] (2011-10-20 20:44:43, 284.7 KB) [[attachment:rubySample4.png]]
• [get | view] (2011-10-20 20:44:43, 1.8 KB) [[attachment:sample_human_network.sif]]
• [get | view] (2011-10-20 20:44:43, 45.6 KB) [[attachment:scripting1.png]]
• [get | view] (2011-10-20 20:44:43, 343.9 KB) [[attachment:scripting2.png]]
• [get | view] (2011-10-20 20:44:43, 1.1 KB) [[attachment:social_graph.js]]
• [get | view] (2011-10-20 20:44:43, 2.7 KB) [[attachment:social_graph_new.js]]
• [get | view] (2011-10-20 20:44:43, 120.9 KB) [[attachment:twitterSample1.png]]
• [get | view] (2011-10-20 20:44:43, 324.2 KB) [[attachment:twitterSample2.png]]

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