Diff for "Refactored_Menu"

Differences between revisions 8 and 9

The following is a tentative plan for the new menu bar.

Since the basic file format for 2.3 and later is Session (.cys), we the save and load functions are now called import/export.

New
- Network
  - Empty Network - Cytoscape Editor will be called from here.
    - COMMENT from AllanK: Kei, what if somebody wants to edit an existing network? That wouldn't be possible under this scheme.
  - From selected nodes, all edges (Ctrl-N)
  - From Selected nodes, selected edges (Shift+Ctrl-N)
- Session - Clean current workspace (networks and attributes) and start a new session.
Save - Save current session into a CYS file. Overwrite existing session file.
Save As... - Save the session with new name. File chooser will pop-up.
Open - Open the session file. Current session will be lost (dialog box will appear).
(Separator)
Import
- Network (Ctrl-L) - Load network files: SIF, GML, or XGMML.
- Node Attributes
- Edge Attributes
- Expression Matrix File (Ctrl-E)
- Gene Ontology
Export
- Network and Attributes as XGMML
- Network as GML
(Separator)
Print (Ctrl-P) -- Print out current network as a graphic.
Quit (Ctrl-Q) -- Quit from Cytoscape. Confirmation dialog will appear.

CytoPanels menu item is implemented as a submenu of this.

Formerly called Layout and Visualization.

List of loaded plugins will be displayed here. Same as 2.2.

Basically, this is same as 2.2.

-  ← Revision 8 as of 2006-02-23 01:04:41 →
  Size: 2003
  Editor: cosiapat1
  Comment:
+  ← Revision 9 as of 2006-02-23 01:05:30 →
  Size: 2007
  Editor: cosiapat1
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 11:
-           * '''COMMENT''' from AllanK: Kei, what if somebody wants to edit an existing network?  That wouldn't be possible under this scheme.
+           * '''COMMENT''' ''from AllanK: Kei, what if somebody wants to edit an existing network?  That wouldn't be possible under this scheme.''