Differences between revisions 2 and 4 (spanning 2 versions)
Revision 2 as of 2006-02-23 00:04:27
Size: 422
Editor: KeiichiroOno
Comment:
Revision 4 as of 2006-02-23 00:21:08
Size: 1068
Editor: KeiichiroOno
Comment:
Deletions are marked like this. Additions are marked like this.
Line 6: Line 6:
Since the basic file format for 2.3 and later is ''Session (.cys)'', we the save and load functions are now called import/export.
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 * New
    * Network
      * Empty Network -- Cytoscape Editor will be called from here.
      * From selected nodes, all edges (Ctrl-N)
      * From Selected nodes, selected edges (Shift+Ctrl-N)
    * Session
 * Save
 * Save As...
 * Open
 * (Separator)
 * Import
 * Export
    * Network and Attributes as XGMML
    * Network as GML
 *(Separator)
 * Print (Ctrl-P) -- Print out current network as a graphic.
 * Quit (Ctrl-Q) -- Quit from Cytoscape. Confirmation dialog will appear.
Line 20: Line 38:
 * (Separator)

Refactored Menu

The following is a tentative plan for the new menu bar.


File

Since the basic file format for 2.3 and later is Session (.cys), we the save and load functions are now called import/export.

  • New
    • Network
      • Empty Network -- Cytoscape Editor will be called from here.
      • From selected nodes, all edges (Ctrl-N)
      • From Selected nodes, selected edges (Shift+Ctrl-N)
    • Session
  • Save
  • Save As...
  • Open
  • (Separator)
  • Import
  • Export
    • Network and Attributes as XGMML
    • Network as GML
  • (Separator)
  • Print (Ctrl-P) -- Print out current network as a graphic.
  • Quit (Ctrl-Q) -- Quit from Cytoscape. Confirmation dialog will appear.

Edit

Data

Select

View

Formerly called Layout and Visualization.

Plugins

List of loaded plugins will be displayed here. Same as 2.2.

Help

Basically, this is same as 2.2.

  • Contents (F1)
  • Context Sensitive (Shift+F1)
  • (Separator)
  • About

Refactored_Menu (last edited 2009-02-12 01:03:41 by localhost)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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