Differences between revisions 11 and 35 (spanning 24 versions)
← Revision 11 as of 2006-06-09 17:17:27 →
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Editor: Bluenj
Comment:
← Revision 35 as of 2007-04-22 14:47:38 →
Size: 2433
Editor: ujdr9rftay
Comment: add "undirected edges" RFC (following Mike Smoot's request)
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 * [:RFC 1: RFC 1]: Migrating !GraphObjAttributes to !CyAttributes
 * [:RFC 2: RFC 2]: Improving the quality of the Cytoscape 2.3 release
 * [:RFC 3: RFC 3]: Migrating the user manual to the wiki
 * [:License clean-up RFC: RFC 4]: Java code license clean-up
 * [:Wiki clean-up RFC: RFC 5]: Wiki clean-up 
 * [:HeadlessModeRFC: RFC 6]: Cytoscape headless mode operation
 * [:ImportableFileTypeRFC: RFC 7]: Adding support for additional file types
 * [:MetaNodes_RFC: RFC 8]: !MetaNodes
 * [:SimplifiedMetaNodeDataStructureRFC: RFC 9]: Simplified !MetaNode Data Structure
 * [:PreferenceInitializationRFC: RFC 10]: Preferences initialization
 * [:UndoManager_RFC: RFC 11]: Cytoscape Undo Manager
 * [:VizMapPropsRFC: RFC 12]: Fixing the loading and saving of the vizmap.props file 		 * ["RFC 1"]: Migrating !GraphObjAttributes to !CyAttributes
 * ["RFC 2"]: Improving the quality of the Cytoscape 2.3 release
 * ["RFC 3"]: Migrating the user manual to the wiki
 * [:License clean-up RFC:RFC 4]: Java code license clean-up
 * [:Wiki clean-up RFC:RFC 5]: Wiki clean-up
 * [:HeadlessModeRFC:RFC 6]: Cytoscape headless mode operation
 * [:ImportableFileTypeRFC:RFC 7]: Adding support for additional file types
 * [:MetaNodes RFC:RFC 8]: !MetaNodes
 * [:SimplifiedMetaNodeDataStructureRFC:RFC 9]: Simplified !MetaNode Data Structure
 * [:PreferenceInitializationRFC:RFC 10]: Preferences initialization
 * [:UndoManager RFC:RFC 11]: Cytoscape Undo Manager
 * [:VizMapPropsRFC:RFC 12]: Fixing the loading and saving of the vizmap.props file
 * [:BioDataServerRFC:RFC 13]: New Bio Data Server (Gene Ontology Server)
 * [:QuickFindRFC:RFC 14]: Quick Find Feature
 * [:CytoscapeIcons:RFC 15]: New Icon Set for Cytoscape 2.4
 * [:SimpleTextTableImport:RFC 16]: Text Table Network File Import
 * [:ImportableFileTypeRFC:RFC 17]: Importable File Type
 * [:groupAPI:RFC 18]: Group API (replaces RFC 8 and RFC 9)
 * [:HyperEdgeAPI:RFC 19]: Hyper''''''Edge API
 * [:TextFileImport:RFC 20]: General Text/Excel file import framework
 * [:GuiTesting:RFC 21]: User interface testing framework
 * [:SingleInstanceWebstart:RFC 22]: Creating single instance webstarts
 * [:ImportExportMenus:RFC 23]: Cleaning up the import/export file menus
 * [:VizMapUI:RFC 24]: Visual Mapping GUI Redesign
 * [:BubbleRouterRFC:RFC 25]: Bubble Router Plugin
 * [:PerformanceProfilingRFC:RFC 26]: Performance Profiling
 * [:Pluginwebsite:RFC 27]: Plugin Web site and auto import
 * [:MultilevelLayout:RFC 28]: Multilevel graph layout algorithm
 * [:WebServicesIDMapping:RFC 29]: Web services API for ID mapping/translator service
 * [:UndirectedEdges:RFC 30]: Making undirected edges first-class citizens
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== RFC Template ==
Creating a new RFC? Use the: RfcTemplate

Request for Comments (RFCs)

About RFCs

RFCs represent one possible mechanism for soliciting feedback for core Cytoscape features / refactoring. For details on RFCs in general, check out the [http://www.answers.com/main/ntquery?method=4&dsid=2222&dekey=Request+for+Comments&gwp=8&curtab=2222_1&linktext=Request%20for%20Comments Wikipedia Entry: Request for Comments (RFCs)]

RFC Index

  • ["RFC 1"]: Migrating GraphObjAttributes to CyAttributes

  • ["RFC 2"]: Improving the quality of the Cytoscape 2.3 release
  • ["RFC 3"]: Migrating the user manual to the wiki

  • [:License clean-up RFC 4]: Java code license clean-up

  • [:Wiki clean-up RFC 5]: Wiki clean-up

  • [:HeadlessModeRFC:RFC 6]: Cytoscape headless mode operation

  • [:ImportableFileTypeRFC:RFC 7]: Adding support for additional file types

  • [:MetaNodes RFC 8]: MetaNodes

  • [:SimplifiedMetaNodeDataStructureRFC:RFC 9]: Simplified MetaNode Data Structure

  • [:PreferenceInitializationRFC:RFC 10]: Preferences initialization

  • [:UndoManager RFC 11]: Cytoscape Undo Manager

  • [:VizMapPropsRFC:RFC 12]: Fixing the loading and saving of the vizmap.props file

  • [:BioDataServerRFC:RFC 13]: New Bio Data Server (Gene Ontology Server)

  • [:QuickFindRFC:RFC 14]: Quick Find Feature

  • [:CytoscapeIcons:RFC 15]: New Icon Set for Cytoscape 2.4

  • [:SimpleTextTableImport:RFC 16]: Text Table Network File Import

  • [:ImportableFileTypeRFC:RFC 17]: Importable File Type

  • [:groupAPI:RFC 18]: Group API (replaces RFC 8 and RFC 9)

  • [:HyperEdgeAPI:RFC 19]: HyperEdge API

  • [:TextFileImport:RFC 20]: General Text/Excel file import framework

  • [:GuiTesting:RFC 21]: User interface testing framework

  • [:SingleInstanceWebstart:RFC 22]: Creating single instance webstarts

  • [:ImportExportMenus:RFC 23]: Cleaning up the import/export file menus

  • [:VizMapUI:RFC 24]: Visual Mapping GUI Redesign

  • [:BubbleRouterRFC:RFC 25]: Bubble Router Plugin

  • [:PerformanceProfilingRFC:RFC 26]: Performance Profiling

  • [:Pluginwebsite:RFC 27]: Plugin Web site and auto import

  • [:MultilevelLayout:RFC 28]: Multilevel graph layout algorithm

  • [:WebServicesIDMapping:RFC 29]: Web services API for ID mapping/translator service

  • [:UndirectedEdges:RFC 30]: Making undirected edges first-class citizens

  • Please add your next RFC here...

RFC Template

Creating a new RFC? Use the: RfcTemplate

RFC_Index (last edited 2015-06-05 00:20:36 by bdemchak)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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