Differences between revisions 2 and 8 (spanning 6 versions)
Revision 2 as of 2005-10-11 20:22:04
Size: 854
Editor: mskresolve-b
Comment:
Revision 8 as of 2005-10-21 21:16:06
Size: 1147
Editor: mskresolve-b
Comment: Updated status on a few items.
Deletions are marked like this. Additions are marked like this.
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  * Finalize {{{CyAttributes}}} API, based on public review (10/13/2005)
  * Implement {{{CyAttributesImpl}}} (Nerius)
  * Finalize {{{CyAttributes}}} API, based on public review [Done: 10/13/2005]
  * Agree on way to access global attributes and implement [Done: 10/17/2005]
  * Deprecate all attribute access methods in {{{Cytoscape.java}}} and {{{CyNetwork.java}}} (Ethan) [Done: 10/17/2005]
  * Revert {{{Cytoscape.java}}} and {{{CyNetwork.java}}} to return {{{GraphObjAttribute}}} for backward compability (Ethan) [Done: 10/17/2005]
  * Implement {{{CyAttributesImpl}}} [Done: 10/15/2005]
    * Write Unit Test (Ethan) [Done: 10/15/2005]
  * Implement {{{GraphObjAttributes}}} (Nerius) [In Progress]
    * Write Unit Test (Ethan) [Done: 10/21/2005]
  * Write {{{CyAttributesReader}}} (Nerius) [In Progress]
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  * Implement {{{GraphObjAttributes}}} (Nerius)   * Write {{{CyAttributesWriter}}} (Nerius) [In Progress]
Line 8: Line 15:
  * Write {{{CyAttributesReader}}} (Nerius)
    * Write Unit Test (Ethan)
  * Write {{{CyAttributesWriter}}} (Nerius)
    * Write Unit Test (Ethan)
  * Agree on way to access global attributes and implement (Subgroup)
  * Deprecate all attribute access methods in {{{Cytoscape.java}}} and {{{CyNetwork.java}}} (Ethan)
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  * Remove {{{CytoscapeData}}} and {{{CytoscapeDataImpl}}} from core (Ethan)   * Remove {{{CytoscapeData}}} and {{{CytoscapeDataImpl}}} from core (Ethan) [Done: 10/21/2005]

Implementation Plan for RFC #1

  • Finalize CyAttributes API, based on public review [Done: 10/13/2005]

  • Agree on way to access global attributes and implement [Done: 10/17/2005]
  • Deprecate all attribute access methods in Cytoscape.java and CyNetwork.java (Ethan) [Done: 10/17/2005]

  • Revert Cytoscape.java and CyNetwork.java to return GraphObjAttribute for backward compability (Ethan) [Done: 10/17/2005]

  • Implement CyAttributesImpl [Done: 10/15/2005]

    • Write Unit Test (Ethan) [Done: 10/15/2005]
  • Implement GraphObjAttributes (Nerius) [In Progress]

    • Write Unit Test (Ethan) [Done: 10/21/2005]
  • Write CyAttributesReader (Nerius) [In Progress]

    • Write Unit Test (Ethan)
  • Write CyAttributesWriter (Nerius) [In Progress]

    • Write Unit Test (Ethan)
  • Replace all calls to GraphObjAttributes with calls to CyAttributes (Iliana)

  • Remove CytoscapeData and CytoscapeDataImpl from core (Ethan) [Done: 10/21/2005]

  • Verify that all references to GraphObjAttributes have been removed

  • Celebrate

RFC_1/RFC1_Implementation_Plan (last edited 2009-02-12 01:03:00 by localhost)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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