Recent Presentation Slides
Cytoscape Online Tutorials
See our most up-to-date tutorials on OpenTutorials.
Older Tutorials
To get you started with Cytoscape: Getting Started Guide
The Cytoscape Online Tutorials from cytoscape.org have been moved here and updated for use with version 2.4.
Getting Started, Filters & Editor, Fetching External Data, Web Services Clients, Expression Analysis
- Literature Searching, Gene Ontology Annotation, Modules and Complexes, and Web Services
A Cytoscape tutorial series of lectures, videos, and exercises can be found at http://www.csc.fi/english/research/sciences/bioscience/Courses_and_events/cytoscape/index_html. Note that the videos require RealPlayer to view.
Presentations and Lecture Slides
Please feel free to use these lecture slides for your own presentations about Cytoscape.
Print this Cytoscape Handout for your lectures
CytoscapeAndR2_16_4_09.ppt A presentation on Cytoscape in general and a specific plugin R2 (by Piet Molenaar, partly based on slides by Tero Aittokallio)
Data Integration with Cytoscape at EMBL-EBI Biological Networks: Reconstruction, Analysis, and Modelling (May 5 & 6 2009)
Use Mondrian Cytoscape Web Start as a demonstration
LaTeX file, Makefile, included EPS files, and lecture notes as TeX comments
Requires beamer to be installed
EPS diagrams made with OmniGraffle