Preconditions

Test Case ID

Instructions

Expected Results

Windows

Mac

Date Executed

Pass/Fail

Date Executed

Pass/Fail

1. Start Cytoscape
2. Import a network file (eg. galFiltered.sif)
3. Click on File from the toolbar

FM9.1

1. Select Import → Network (multiple file types)…
2. Choose the galFiltered.xgmml file from the sampelData directory and click Import

A new version of the galFiltered network should appear in a different window

FM9.2

Import Network from Table (Text/MS Excel) is covered under the Table Import core plugin test cases

FM9.3

Import Network from web services under construction

FM9.4

Importing node attributes is covered under the Node Attribute Browser core plugin test cases

FM9.5

Importing Attributes from Table (Text/MS Excel) is covered under the Browser test cases Core Plugin Testcases

FM9.6

Importing edge attributes is covered under the Edge Attribute Browser core plugin test cases

FM9.7

1. Select Import → Ontology and Annotation…
2. Select Gene Association File for Saccharomyces cerevisiae from the Annotation menu and leave the default setting for Ontology
3. Select one of the galFiltered networks and click on Go common Name from the Node Attribute Browser Select Attributes menu

Cytoscape should show a large network under the Networks tab in the Control Panel (view not created due to size) and there should be new attributes available for selection in the Node Attribute Browser

FM9.8

Importing an Attribute Expression Matrix is covered under the Node Attribute Browser core plugin test cases

FM9.9

1. Select Import → Vizmap Property File…
2. Choose sampleStyles.props from the sampleData directory and click Open

All the nodes in the galFiltered network should be light gray with no border and each edge should be a black line labelled with the type of interaction that it represents

FM9.10

1. Select Import → Import Attributes from NCBI Entrez Gene…
2. Click Import
3. Select one of the galFiltered networks and click on EntrezGene ID from the Node Attribute Browser Select Attributes menu

New attributes should be available for selection under the Node Attribute Browser including EntrezGene ID

FM9.11

1. Select Import → Import Attributes from Biomart…
2. Select ENSEMBL 54 GENES (SANGER UK) – Saccharomyces cerevisiae genes (SGD1.01) from the Data Source menu and GO ID(s) from the Data Type menu
3. Click the check box on the top of the list of available attributes and click Import
4. Select one of the galFiltered networks and click on the new attribute from the Node Attribute Browser Select Attributes menu

New attributes should be available for selection under the Node Attribute Browser