Preconditions

Test Case ID

Instructions

Expected Results

Windows

Mac

Date Executed

Pass/Fail

Date Executed

Pass/Fail

1. Start Cytoscape
2. Import a network file (eg. galFiltered.sif)
3. Click on File from the toolbar

FM10.1

1. Select Export → Network and attributes as XGMML…
2. Save as Test1.xgmml
3. Close Cytoscape and restart it, Select Import → Network (multiple file types)… and import Test1.xgmml

Test1 should be an exact copy of the network exported before restarting Cytoscape

FM10.2

1. Select Export → Network as GML…
2. Save as Test2.gml 3. Select Import → Network (multiple file types)… and import Test2.gml

Test2 should be a copy of the network exported but should have slightly different features (eg. Background)

FM10.3

1. Select Export → Network as SIF File…
2. Save as Test3.sif 3. Select Import → Network (multiple file types)… and import Test3.sif

Test3.sif should be a copy of the network exported and should be exactly the same as galFiltered.sif modulo whitespace and order differences. The displayed networks should be the same.

FM10.4

1. Select Export → Node Attributes
2. Click the GO Common Name check box from the list of attributes
3. Click Choose Directory and Save, select the desired directory and click Choose

Verify that the attributes were saved by opening the attribute file in a text editor, the file should contain a list of the gene IDs from the network and their corresponding GO common names

FM10.5

1. Select Export → Edge Attributes
2. Click the interaction check box from the list of attributes
3. Click Choose Directory and Save, select the desired directory and click Choose

Verify that the attributes were saved by opening the attribute file in a text editor, the file should contain a list of the edge IDs from the network and their corresponding interactions

FM10.6

1. Click on the galFiltered.sif network from the Networks tab
2. Select Export → Vizmap properties
3. Type Test4.props as the file name, choose the appropriate directory and click save
4. Click on a different network (with a different visual style) and Select Import → Vizmap Property File…

The currently selected network should now exhibit the visual style of the network whose Vizmap properties were exported

FM10.7

1. Select Export → Network as Graphics…
2. Click Choose and type Yeast Network as the file name and click Save
3. Leave the Format as PDF and Click OK
4. Open Yeast Network.pdf in a PDF reader

The PDF should contain a screen shot of the portion of the network visible in the canvas

FM10.8

1. Repeat steps 1 & 2 from FM10.7
2. Select .PNG from the format menu and click OK
3. Leave the bitmap settings as default and click OK
4. Open the Yeast Network.png in a picture viewer

The PNG should contain a screen shot of the portion of the network visible in the canvas

FM10.9

Export of PSI-MI 1.0 under construction

FM10.10

Export of PSI-MI 2.5 under construction