← Revision 3 as of 2006-11-21 22:23:26
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Comment: Added information on importance
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← Revision 4 as of 2007-03-27 20:53:10 →
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Just remove the pagecomment macro to reduce spam
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GaryBader 2006-12-26 12:28:20 Similar to sub-gene use case for Group API AllanKuchinsky 2007-01-22 05:11:24 case of binding site label sticking out perpendicularly from the protein can be handled with Custom Node Graphic |
Use Case Name : ../ProteinBindingSites |
For Feature : MIMEditor |
Editors: DavidKane |
Summary
A user wants to describe interactions of a protein, binding site by binding site.
Step-by-Step User Action
- User specifies a protein to be described in more detail
- User specifies the number of binding sites to be included
- User specifies the name of each binding site
- User then uses each binding site in subsequent reactions
Visual Aides
Binding sites are indicated with the binding site label sticking out perpendicularly from the protein. An example follows:
attachment:bindingsite1_061117_dwk.png
A binding site may also be used in combination with the specification of ../ProteinDomains:
attachment:bindingsite2_061117_dwk.png
Requirements for Cytoscape
TBD
Importance
This is a moderately important feature of the notation.
Other Examples
Comments
Shared ../MimEditorUseCaseComments
BioPax representation TBD
GaryBader 2006-12-26 12:28:20
Similar to sub-gene use case for Group API
AllanKuchinsky 2007-01-22 05:11:24
case of binding site label sticking out perpendicularly from the protein can be handled with Custom Node Graphic