Diff for "Molecular_Interaction_Maps/BooleanLogic"

Differences between revisions 1 and 3 (spanning 2 versions)

Use Case Name : BooleanLogic

For Feature : MIMEditor

Editors: DavidKane

TableOfContents([2])

Summary

A wants to use the logical expressions AND or OR to describe the participants in a reaction.

Step-by-Step User Action

User specifies an existing contingency relationship (e.g. ../ProcessStimulation or ../ShowInhibition)
User specifies another species to be involved in that relationship
User specifies a logical operator (i.e. AND or OR)
User connects the species to the relationship using the logical operator
User optionally specifies the evidence for this reaction

Visual Aides

The AND notation uses converging edges to form an accute angle to indicate that all of the elements on the left, are required by the contigency relationship indicated by the arrowhead on the right.

attachment:booleannotation1_061117_dwk.png

The OR notation uses parallel edges to to indicate that all of the elements on the left, can independently have contigency relationship indicated by the arrowhead on the right.

attachment:booleannotation2_061117_dwk.png

Requirements for Cytoscape

TBD

Importance

TBD

Variations

attachment:booleannotation3_061117_dwk.png

Some maps also use the following shorthand notation. This the shorthand notation for AND, it is the equivalent of the example above.

attachment:booleannotation4_061117_dwk.png

This the shorthand notation for OR, it is the equivalent of the example above.

attachment:booleannotation5_061117_dwk.png

This the shorthand notation that combined AND and OR, it is the equivalent of the example above.

attachment:booleannotation6_061117_dwk.png

Other Examples

The AND and OR notations can be combined, as in this example.

Comments

Shared ../MimEditorUseCaseComments

BioPax representation TBD

PageComment2

Molecular_Interaction_Maps/BooleanLogic (last edited 2009-02-12 01:03:14 by localhost)

-  ← Revision 1 as of 2006-11-20 15:58:28 →
  Size: 3251
  Editor: lfrq80
  Comment:
+  ← Revision 3 as of 2006-11-20 16:09:07 →
  Size: 3514
  Editor: lfrq80
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
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-## This template may be useful for documenting use cases 

## Developed in response to a hackathon request for formalized, detailed use cases
+## This template may be useful for documenting use cases

## Developed in response to a hackathon request for formalized, detailed use cases
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-|| '''Use Case Name''' : BooleanLogic ||

|| '''For Feature''' : MIMEditor ||

|| '''Editors''': DavidKane ||



## EXAMPLE:
+||'''Use Case Name''' : BooleanLogic ||

||'''For Feature''' : MIMEditor ||

||'''Editors''': DavidKane ||

## EXAMPLE:
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-. User specifies an existing contingency relationship (e.g. ../ProcessStimulation  or  ../ShowInhibition)
+. User specifies an existing contingency relationship (e.g. ../ProcessStimulation or ../ShowInhibition)
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 . User optionally specifies the evidence for this reaction
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+The AND notation uses converging edges to form an accute angle to indicate that all of the elements on the left, are required by the contigency relationship indicated by the arrowhead on the right.
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-The AND notation uses converging edges to form an accute angle to indicate that all of the elements on the left, are required by the contigency relationship indicated by the arrowhead on the right.
+attachment:booleannotation1_061117_dwk.png
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+attachment:booleannotation2_061117_dwk.png
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+TBD
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-TBD
+== Variations ==



attachment:booleannotation3_061117_dwk.png



Some maps also use the following shorthand notation. This the shorthand notation for AND, it is the equivalent of the example above.



attachment:booleannotation4_061117_dwk.png



This the shorthand notation for OR, it is the equivalent of the example above.



attachment:booleannotation5_061117_dwk.png



This the shorthand notation that combined AND and OR, it is the equivalent of the example above.



attachment:booleannotation6_061117_dwk.png
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-Some maps also use the following shorthand notation.  This the shorthand notation for AND, it is the equivalent of the example above.



This the shorthand notation for OR, it is the equivalent of the example above.



This the shorthand notation that combined AND and OR, it is the equivalent of the example above.
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 Shared ../MimEditorUseCaseComments