Cytoscape Wiki|
← Revision 1 as of 2006-11-15 21:26:00 →
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| || '''Use Case Name''' : AutoDrawBioPax|| | || '''Use Case Name''' : ../AutoDrawBioPax|| |
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| Used by AssistedLayout |
Used by ../AssistedLayout ---- AllanKuchinsky - 2007-01-22 05:29:23 |
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| [[PageComment2]] |
Assume this can be handled by programmatic calls to one or more of the Cytoscape automated layout routines? Is incremental/interactive layout via BubbleRouter applicable as well? |
Summary
A user wants to see a Kohn representation of a BioPAX pathway.
Step-by-Step User Action
- User selects a BioPAX document to view
- The system uses an automated layout program to generate a map using the Kohn notation
Visual Aides
Requirements for Cytoscape
TBD
Importance
Although many of the use cases are cast in terms of editing, this use case could provide a good shorter-term capability that could be useful to both BioPAX-oriented users, and work out the implementation details for representing the Kohn notation.
Other Examples
Many software engineering tools have these sorts of autodraw features from underlying models. E.g. drawing a class diagram from XMI or drawing an ERD from an underlying database.
Comments
Shared ../MimEditorUseCaseComments
Used by ../AssistedLayout
AllanKuchinsky - 2007-01-22 05:29:23
Assume this can be handled by programmatic calls to one or more of the Cytoscape automated layout routines? Is incremental/interactive layout via BubbleRouter applicable as well?