Title: MCODE - Molecular Complex Detection plugin


MCODE finds clusters (highly interconnected regions) in a network. Clusters mean different things in different types of networks. For instance, clusters in a protein-protein interaction network are often protein complexes and parts of pathways, while clusters in a protein similarity network represent protein families.  This presentation will introduce MCODE and discuss new features that are under development.

Data keywords: protein-protein interaction, protein-dna interaction, genetic interaction, protein similarity network

Cytoscape keywords: network clustering algorithm


Bader GD, Hogue CW
An automated method for finding molecular complexes in large protein interaction 
BMC Bioinformatics. 2003 Jan 13;4:2. Epub 2003 Jan 13


McodePluginDemo (last edited 2009-02-12 01:03:13 by localhost)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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