Subject: Announcing Cytoscape Version 2.1


Cytoscape is an open-source bioinformatics software platform for visualizing
molecular interaction networks and integrating these interactions with gene
expression profiles and other state data.

New version 2.1 Features:

For users:
-Major performance improvements
-Complete on-line help system
-cPath plugin for downloading protein interactions
-Better network filtering including large network support
-Layout and rotate selected nodes
-Progress bars on long tasks
-Support for very large networks (>100K nodes, edges)
-Numerous Bug Fixes.
-Numerous plugins available for feature expansion and network analysis
        E.g. Active Modules, MCODE, LitSearch

For programmers:
-Significantly expanded API technical documentation
-New task framework for long-term tasks
-Headless mode (command line only operation) for advanced scripting

Best regards,
The Cytoscape Collaboration

How_to_announce_a_new_Cytoscape_release/Cytoscape_2.1_Announcement (last edited 2009-02-12 01:03:29 by localhost)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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