Introductory Cytoscape tutorial: http://opentutorials.rbvi.ucsf.edu/index.php/Tutorial:Introduction_to_Cytoscape

• To follow during the first lab

Collaborative course notes: https://docs.google.com/document/edit?id=117SJMdDmaih39iBLCrFIvwvPuDS5z6_tztnVYJZb3rM&hl=en&authkey=CJKno5oC

• Have anything to share with others in the course? Feel free to add it to this document.

• How to visually interpret biological data using networks

• Integration of biological networks and gene expression data using Cytoscape.

• Cytoscape: a software environment for integrated models of biomolecular interaction networks.

• http://www.silicongenetics.com/Support/GeneSpring/GSnotes/analysis_guides/mtc.pdf

• Genetic landscape of the cell, BooneLab, (Sciencepaper: http://www.ncbi.nlm.nih.gov/pubmed/20093466)

• Gene knockout timeseries

• Sample src for TimeSeriesPlugin (note, to have it working needs a database, serves as sample code only)

• http://chianti.ucsd.edu/svn/