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 * Select: File → Import → Network from web services...
 * From the pull-down menu, select !Intact Web Service Client.
 * Enter a search term, such as BRCA1; and click Search.

Importing Networks from External Databases

Cytoscape users can import networks and pathways directly from external databases.

By default, direct access to the following external resources is provided:

Getting Started

To get started, select: File → Import → Network from web services...

attachment:file_import.png

Example #1: Retrieving Data from IntAct

  • Select: File → Import → Network from web services...

  • From the pull-down menu, select !Intact Web Service Client.
  • Enter a search term, such as BRCA1; and click Search.

Example #2: Retrieving Data from Pathway Commons

Cytoscape_User_Manual/ImportingNetworksFromWebServices (last edited 2010-07-28 03:24:29 by KeiichiroOno)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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