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Cytoscape includes the ability to import networks and pathways directly from external databases.

By default, Cytoscape provides direct access to the following external resources:

[http://www.ebi.ac.uk/intact/site/index.jsf IntAct]: an open source database of protein interaction data, hosted at EMBL-EBI.
[http://www.pathwaycommons.org Pathway Commons]: an open source portal, providing access to multiple integrated data sets, including: Reactome, IntAct, HPRD, HumanCyc, MINT, the MSKCC Cancer Cell Map, and the NCI/Nature Pathway Interaction database.

To get started, select: File → Import → Network from web services...

attachment:file_import.png

Cytoscape_User_Manual/ImportingNetworksFromWebServices (last edited 2010-07-28 03:24:29 by KeiichiroOno)

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-To get started, select: File &rarr; Import &rarr; Network from web services...



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-=== Example #1:  Retrieving Data from !IntAct ===
+=== Getting Started ===



To get started, select: File &rarr; Import &rarr; Network from web services...



attachment:file_import.png



=== Example #1:  Retrieving Data from IntAct ===