Cytoscape_User_Manual/Acknowledgements

Cytoscape is built with a number of open source third-party Java libraries. The Cytoscape team gratefully acknowledges the following libraries:

• The Colt Distribution: Open Source Libraries for High Performance Scientific and Technical Computing in Java. Information is available at: http://hoschek.home.cern.ch/hoschek/colt/.

• Graph INterface librarY a.k.a. GINY. Information is available at: http://csbi.sourceforge.net/.

• JDOM. Information is available at: http://www.jdom.org.

• JUnit. Information is available at: http://junit.org.

• JGoodies Looks. Information is available at: http://www.jgoodies.com/freeware/looks/index.html.

• Piccolo. Information is available at: http://www.cs.umd.edu/hcil/jazz/.

• Type-Specific Collections Library, from Sosnoski Software Solutions, Inc. Information is available at: http://www.sosnoski.com/opensrc/tclib/.

• Xerces Java XML parser. Information is available at: http://xml.apache.org/xerces-j/.

• CLI command line parser. Information is available at: http://jakarta.apache.org/commons/cli/.

• FreeHEP library. Information is available at: http://java.freehep.org.

This product includes software developed by the Apache Software Foundation (http://www.apache.org/).

This product includes software developed by the JDOM Project (http://www.jdom.org/).

One-step installation of the Cytoscape software is accomplished using the InstallAnywhere product from ZeroG Software, Inc. (http://zerog.com)