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  * Wrote a lot of the original plugin tutorial content

List of developers and their roles, so people know who to ask questions to.

Note: the official list of developers is on http://cytoscape.org/people.php

Principal Investigators:

  • Leroy Hood - Director at ISB
  • Trey Ideker - PI at UCSD
  • Chris Sander - Director at MSKCC
  • Benno Schwikowski - PI at Pasteur

Developers

  • Iliana Avila-Campillo - Developer at ISB
  • Richard Bonneau - Manager at ISB
  • [wiki:GaryBader Gary Bader] - Manager at MSKCC

  • Ethan Cerami - Developer at MSKCC
    • Task API
    • CytoPanels

    • Partial Vizmapper refactoring
  • Rowan Christmas - Developer at ISB
    • CytoscapeData interface

    • Filters
    • Original GINY (graph library)
    • Many, many core aspects of Cytoscape 2.0 application - menus, initialization, yLayouts, context menu, etc.
    • 2.0 refactoring
    • Wrote a lot of the original plugin tutorial content
  • Melissa Cline - Developer at Pasteur
    • Documentation and web tutorials
  • Ben Gross - Developer at UCSD
  • Ryan Kelley - Developer at UCSD
    • Filters
  • Nerius Landys - Developer at UCSD
    • Refactored GINY into FING (graph library)
    • Internal implementation of node/edge attributes (CyData)

  • Keiichiro Ono - Developer at UCSD
    • OBO wizard
  • Mike Smoot - Developer at UCSD
  • Michael Creech
  • Allan Kuchinsky
    • Graph editing
  • Aditya Vailaya

Previous developers

  • Nada Amin
  • Mark Anderson (UCSD - Ideker)
    • Help system
    • Preferences dialog
  • Larissa Kamenkovich (ISB - Bolouri)
  • Andrew Markiel (ISB - Schwikowski)
    • 2.0 refactoring
  • Owen Ozier (MIT - Ideker)
    • Visual mapper
  • Paul Shannon (ISB)
    • Original Cytoscape developer - set up many core concepts e.g. plugins
  • Robert Sheridan (MSKCC - Sander)
    • Hierarchical layout
  • Jonathan Wang (MIT - Ideker)
    • Visual mapper

Please edit/fix this list as you see fit.

Note: This list is likely to be imcomplete and out of date. Check the CVS commit messages for a class of interest to see who has worked on it.

Cytoscape_People_and_Roles (last edited 2009-02-12 01:03:33 by localhost)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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