Cytoscape_3/UserManual/Scripting

Scripting in Cytoscape 3

Scripting language support is an experimental feature in Cytoscape 3. Java runtime environment comes with built-in scripting language support and Cytoscape uses it to execute tasks written in standard languages such as JavaScript.

This feature is for advanced users. If you just want to automate some basic tasks, such as loading network, you can use Command instead.

Run Cytoscape from Command Line

To use Scripting feature,

JavaScript

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.