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Comment: Add some more positive notes for 2.x users
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Cytoscape @version@ is the latest version of Cytoscape, which introduces a whole new architecture, developer API and set of user controls when compared with the 2.X series. Cytoscape @version@ represents a major redesign from the ground up, toward the goal of providing a stable, extensible, high-performance platform for network visualization and analysis. That being said; if you're familiar with former versions of Cytoscape, this version will feel completely familiar and you'll be set to go directly ''This manual describes the installation and use of Cytoscape. For a more thorough understanding of Cytoscape and its ecosystem, we highly recommend reading the '''Welcome Letter''' accessible on the [[http://cytoscape.org]] website.'' This release introduces users to new interfaces and features: * New welcome screen and toolbar for quick access to common actions * New Data Table controls to interface with your data * Integrated support for graphical annotations in networks * Support for independent sets of networks within a single session * Advanced network and table import controls * Improved architecture and API for a more stable experience In future releases, we will continue to tweak and improve both the software and the documentation. This manual will be updated to reflect all the latest changes. |
#DEPRECATED <<Include(Cytoscape_3/UserManual/Deprecated)>> |
This is a legacy document
This page has been deprecated and is no longer updated. The current version of the Cytoscape manual can be found at http://manual.cytoscape.org/
This manual describes the installation and use of Cytoscape. For a more thorough understanding of Cytoscape and its ecosystem, we highly recommend reading the Welcome Letter accessible on the http://cytoscape.org website.