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In order to load network from local files you can select File → Import → Network → File... or click on {{Cy3_icon_net_file_import.png}} on the tool bar. In order to load network from local files you can select File → Import → Network → File... or click on {{attachment:Cy3_icon_net_file_import.png}} on the tool bar.

There are 4 different ways of creating networks in Cytoscape:

  1. Importing pre-existing, formatted network files.
  2. Importing pre-existing, unformatted text or Excel files.
  3. Importing networks from Web Service.
  4. Creating an empty network and manually adding nodes and edges.

Import Fixed-Format Network Files

Network files can be specified in any of the formats described in the Supported Network Formats chapter. Networks are imported into Cytoscape through the "Import Network" window, which can be accessed by going to File → Import → Network (multiple file types). The network file can either be located directly on the local computer, or found on a remote computer (in which case it will be referenced with a URL).

Load Networks from Local Computer

In order to load network from local files you can select File → Import → Network → File... or click on Cy3_icon_net_file_import.png on the tool bar.

Cytoscape_3/UserManual/Creating_Networks (last edited 2016-04-26 22:14:34 by server2)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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