Cytoscape_3/Cy3TestPlan/tools_menu

Preconditions

Test Case ID

Instructions

Expected Results

Date Executed

Pass/Fail

1. Start Cytoscape
2. Load galFiltered.sif

NA1

Run Analyze Network command as undirected

NA2

Run Analyze Network command as directed

NA3

NA4

NA5

NA6

NA7

NA8

NA9

NA10

Preconditions

Test Case ID

Instructions

Expected Results

Date Executed

Pass/Fail

1. Start Cytoscape

CM1

Load a sample command file

Script runs and creates a new network

CM2

Select List All Commands menu

A dialog appears and all commands should be displayed

Preconditions

Test Case ID

Instructions

Expected Results

Date Executed

Pass/Fail

1. Start Cytoscape
2. Import a network file (eg. galFiltered.sif)

SC1

Load a sample script

Script runs and creates a new network

SC2

Run a command from command line to load a sample script file

Preconditions

Test Case ID

Instructions

Expected Results

Date Executed

Pass/Fail

1. Start Cytoscape
2. Import two network files: (eg. galFiltered.sif and BINDyeast.sif)
3. Click on Plugins and select Advanced Network Merge
4. Select each network from the available networks box and then click the right arrow to move them to the selected networks box.
5. Click OK to merge the selected networks (Note: with large networks Cytoscape may not automatically create a graphical view, so click on the Edit menu with the network highlighted and click on Create View)

GM1

Before precondition step 5 select the Union operation

A new graph should be created displaying the merged networks (If this does not happen see preconditions Note)

GM2

Before precondition step 5 select the Intersection operation

A new graph should be created displaying the common nodes from the two networks

GM3

Before precondition step 5 select the Difference operation (order matters)

A new graph should be created displaying the parts of the first network that are not in the second network