Cytoscape_3/Cy3TestPlan/tools_menu

Preconditions

Test Case ID

Instructions

Expected Results

Date Executed

Pass/Fail

1. Start Cytoscape
2. Load galFiltered.sif

NA1

Run Analyze Network command as undirected

It pops up a new result dialog and creates several new statistics as table data

7/2/2012

Pass

NA2

Run Analyze Network command as directed

It pops up a new result dialog and creates several new statistics as table data. It should creates new columns valid only for directed craphs (like inDegree/outDegree)

7/2/2012

Pass

NA3

Select some nodes and edges and then run Analyze Subset of Nodes command as undirected

It pops up a new result dialog and creates several new statistics as table data

7/2/2012

Pass

NA4

Select some nodes and edges and then run Analyze Subset of Nodes command as directed

It pops up a new result dialog and creates several new statistics as table data. It should creates new columns valid only for directed craphs (like inDegree/outDegree)

7/2/2012

Pass

NA5

Run Batch Analysis command for a directory with several network files

7/5/2012

Fail

NA6

Repeat NA1 and save the result to a file. Then load the file from Network Statistics menu

NA7

Select Plot Parameters and make sure all buttons works with the newly created paramaters

NA8

Select Visualize Parameter menu and select Degree as Node Size and Color, and Edge Betweenness to Edge Width and Color

New Visual Style should be created and update current network view

7/3/2012

Pass

NA9

Open NetworkAnalyzer Settings panel and edit color scheme for Visualization. Then Repeat NA8

Visualization result should reflect the changes in the setting panel

7/3/2012

Pass

NA10

Open About dialog for Network Analyzer

It pops up about dialog

7/2/2012

Pass

NA11

Open Compare Two Networks command and select all check boxes

7/2/2012

N/A (Disabled because network merge has similar function)

NA12

Select Connected Components command and extract some subcomponents

7/3/2012

Pass

Preconditions

Test Case ID

Instructions

Expected Results

Date Executed

Pass/Fail

1. Start Cytoscape

CM1

Load a sample command file

Script runs and creates a new network

CM2

Select List All Commands menu

A dialog appears and all commands should be displayed

Preconditions

Test Case ID

Instructions

Expected Results

Date Executed

Pass/Fail

1. Start Cytoscape

SC1

Load a sample script to create complete graph

Script creates a complete graph with 20 nodes.

7/5/2012

Pass

SC2

Run the same script from gogo shell by typing cytoscape:script javascript SCRIPT_FILE_NAME

Script creates a complete graph with 20 nodes.

7/5/2012

Pass

Preconditions

Test Case ID

Instructions

Expected Results

Date Executed

Pass/Fail

1. Start Cytoscape
2. Import two network files: (rual.sif and RUAL.subset.sif)
3. Click on Plugins and select Advanced Network Merge
4. Select each network from the available networks box and then click the right arrow to move them to the selected networks box.
5. Click OK to merge the selected networks (Note: with large networks Cytoscape may not automatically create a graphical view, so click on the Edit menu with the network highlighted and click on Create View)

GM1

Before precondition step 5 select the Union operation

A new graph should be created displaying the merged networks (If this does not happen see preconditions Note)

7/9/2012

Pass

GM2

Before precondition step 5 select the Intersection operation

A new graph should be created displaying the common nodes from the two networks

7/9/2012

Pass

GM3

Before precondition step 5 select the Difference operation (order matters)

A new graph should be created displaying the parts of the first network that are not in the second network

7/9/2012

Pass