Cytoscape_2.7/Core Plugins Test Cases/GraphMerge_TestCases_2.7

Preconditions

Test Case ID

Instructions

Expected Results

Date Executed

Pass/Fail

1. Start Cytoscape
2. Import two network files: (eg. galFiltered.sif and BINDyeast.sif)
3. Click on Plugins and select Merge Networks
4. Select each network from the available networks box and then click the right arrow to move them to the selected networks box.
5. Click OK to merge the selected networks (Note: with large networks Cytoscape may not automatically create a graphical view, so click on the Edit menu with the network highlighted and click on Create View)

GM1

Before precondition step 5 select the Union operation

A new graph should be created displaying the merged networks (If this does not happen see preconditions Note)

March 5' 10

P

GM2

Before precondition step 5 select the Intersection operation

A new graph should be created displaying the common nodes from the two networks

March 5' 10

P

GM3

Before precondition step 5 select the Difference operation (order matters)

A new graph should be created displaying the parts of the first network that are not in the second network

March 5' 10

P

Preconditions

Test Case ID

Instructions

Expected Results

Date Executed

Pass/Fail

1. Start Cytoscape
2. Import a network file (eg. galFiltered.sif)

LO1

1. Right click on a node and select LinkOut from the right-click menu
2. Select Reactome → ReactomeID

The link should open the web page www.reactome.org

March 5' 10

P

LO2

1. Right click on a node and select LinkOut from the right-click menu
2. Select Entrez → Protein

The link should open the web page www.ncbi.nlm.nih.gov

March 5' 10

P

LO3

1. Right click on a node and select LinkOut from the right-click menu
2. Select iHOP → yeast

The link should open the web page www.ihop-net.org

March 5' 10

P

Preconditions

Test Case ID

Instructions

Expected Results

Date Executed

Pass/Fail

1. Start Cytoscape
2. Import a network file (eg. galFiltered.sif)

ML1

Select a node on the graph and drag it to a new position and then drop it

The node selected should be highlighted and the user should be able to move it around, the edges connected moving with it

March 5' 10

P

Preconditions

Test Case ID

Instructions

Expected Results

Date Executed

Pass/Fail

1. Start Cytoscape
2. Import a network file (eg. Sample1.xml++)

P1

The graph produced should contain only 6 nodes and 8 edges

March 5' 10

P|