Presenter: Gang Su, Bioinformatics Program, University of Michigan, USA

Title: Normalizing Visualization with Hierarchical Community Structure


I have implemented two community structure algorithms, fast-greedy and fast-greedy w/consolidation ratio into a cytoscape plugin 'GLay'. This plugin allow user to partition an input graph into clusters which maximizes intra-cluster edge density and minimizes inter-cluster edge density w.r.t. a random erdos-renyi graph. These clusters may imply biological complexes or pathways.
A miniposter demonstrating the GUI is attached below.

Mini poster:


CytoscapeRetreat2008/Gang (last edited 2009-02-12 01:03:18 by localhost)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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