Cytoscape Retreat 2007

Amsterdam; the Netherlands - November 6th - 9th, 2007

This is a preliminary set-up for the retreat 2007. Consider it a kind of RFC for the coming month or so; any suggestions changes are welcome! The only date that's pretty much fixed is the symposium date; than is the only time a big conference room is available. In the current scenario (CytoRetreat2007Planning : due in a few days) a first announcement will be sent at the beginning of april; so that should be the end of RFC status.

The 5th Annual Cytoscape Retreat will be held November 6th - 9th, 2006 (Tue-Fri) at the [http://www.amc.nl/ Academic Medical Center] of the University of Amsterdam in the Netherlands. [http://maps.google.com/maps?f=q&hl=en&q=Academisch+Medisch+Centrum,+Amsterdam,+North+Holland,+Netherlands&ie=UTF8&sll=52.373922,4.958954&sspn=0.178998,0.466919&z=11&ll=52.32275,4.957581&spn=0.179205,0.692139&om=1&iwloc=addr map]

The goal of the retreat is threefold:

We want to reach these goals in a retreat spanning four days. The first and last day are mainly intended for the Cytoscape core development team and other developers who write their own Cytoscape plugins. The second and third days are aimed at a wide audience of molecular biologists and bioinformaticians in the Netherlands, Europe and internationally and to attract them we will invite several high profile speakers.

Cytoscape is jointly developed by the groups of Benno Schwikowski (Pasteur Institute, Paris), Trey Ideker (University of California San Diego), Chris Sander (Memorial Sloan-Kettering Cancer Center), Lee Hood (Institute of Systems Biology, Seattle), and Annette Adler (Agilent Technologies, Santa Clara, CA). This year the retreat will be co-hosted by two new contributor groups of Tom Ferrin (UCSF Computer Graphics Laboratory) and Bruce Conklin (Gladstone/UCSF, GenMAPP).

The meeting will mainly be informal and technically focused with all major Cytoscape team members gathered together to set new directions for Cytoscape, plan new features and collaboratively work on code. Cytoscape-related presentations by invitees are welcome. Social activities around the meeting are also scheduled. This is a great chance to influence the development direction of Cytoscape.

Preliminary Schedule

MON November 5th

Meet and greet

Where

Somewhere in Amsterdam

5:00PM-7:00PM

Meet and greet in bar

7:00 PM-(...)

Dinner on own but together ;-)

TUE November 6th

Hackathon

Where

AMC Lectureroom K 01-123

9:30-11:00

Defining issues and breakout groups

11:00-11:30

Coffee break

11:30-12:30

Hacking/Coding in breakout groups

12:30-14:00

Lunch

14:00-15:30

Hacking/Coding in breakout groups

15:30-16:00

Coffee and tea break

16:00-17:00

Results session

17:00-(...)

Hackathon Extension; things todo in Amsterdam

WED November 7th

Demoday Application showcase and hands-on sessions

Where

AMC Lecturerooms K 01-123 and -122 ; parallel sessions

9:30-11:00

Application showcase 1A / Hands-on session 1A

11:00-11:30

Coffee break

11:30-12:30

Application showcase 1B / Hands-on session 1B

12:30-14:00

Lunch

14:00-15:30

Hands-on session 2A/Application showcase 2A

15:30-16:00

Coffee and tea break

16:00-17:00

Hands-on session 2B/Application showcase 2B

17:00-(...)

Hackathon Extension; things todo in Amsterdam

18:00-(...)

SAB & Board of Directors Meeting

THU November 8th

Public Symposium Cytoscape: Network-Based Approaches to Biological Data Integration and Analysis

Where

AMC Conference Room 5

9:15-9:30

Opening

9:30-10:15

Speaker 1

10:15-11:00

Speaker 2

11:00-11:30

Coffee break

11:30-12:00

Speaker 3

12:00-12:30

Speaker 4

12:30-14:00

Lunch

14:00-14:45

Speaker 5

14:45-15:30

Speaker 6

15:30-16:00

Coffee and tea break

16:00-16:30

Speaker 7

16:30-17:00

Speaker 8

19:00-(...)

Conference Dinner

FRI November 9th

Roadmap Defined by devteam

Where

AMC Lecturerooms K 01-123

9:30

Cytoscape 2.5 rundown

10:30

Organize Major Development Tasks and BreakoutGroups

12:30

Working Lunch

13:00

BreakoutGroups Report

13:00

Parallel session of Board of Directors and SAB to discuss vision

15:00

Work on RoadMap2007 / Match Core Developers to Action Items

17:00

Wrap-up: SAB Input, Board Issues & Future Vision

18:45-(...)

Things todo in Amsterdam

Registration

To be done


Location

To be done


Hotel Suggestions

To be done


Travel

To be done


Example Trip Planner

To be done


Amsterdam tourism

To be done

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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