GaryBader - Dec.14.2005 - Re: question 1 - It seems that if the API supports programmer extensibility of event handling and semantics in a clear and UI-independent way, that UIs could be built to support user extensibility of these later - even as plugins. For instance, the CytoPanel API would allow someone to write a plugin that created a control center for CytoPanels, that allows all tabs to be opened/closed, rearranged, etc.

Re: Question 6 - you don't need a BioPAX exporter to go with the BioPAX editor because all state could be saved as Cytoscape attributes and loaded back in. It would be very useful to have a BioPAX exporter, however, which maps from predefined attributes to fields in BioPAX.

CytoscapeEditorFramework/Editor_Framework_Issues_Comment (last edited 2009-02-12 01:03:34 by localhost)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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