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* Cytoscape introduction presentation and demo (Gary Bader) - what biological questions can be answered using Cytoscape | * Cytoscape introduction presentation and demo (Gary Bader) - review biological questions can be answered using Cytoscape |
Cytoscape User Group, Toronto (CyT.O.)
Goal: help users learn to use Cytoscape to answer biologically relevant questions by providing information, tutorials and linking new with experienced users.
Meeting 1 – introduction and organization
Date: [http://tdccbr.med.utoronto.ca/Home.aspx?event_id=8281&PageID=111&view=event_view Mon.Feb.4 at 3pm, CCBR Red Room]
- Widely advertised – posters, mailing lists
- Cytoscape introduction presentation and demo (Gary Bader) - review biological questions can be answered using Cytoscape
Central meeting organization page on Cytoscape wiki “TorontoUserGroup”
Sign up to Google Group mailing list – cytoscape-toronto@googlegroups.com – have an email sign up sheet at the meeting to get this list started
Group homepage: http://groups.google.com/group/cytoscape-toronto?hl=en
- Develop list of experienced Cytoscape users in Toronto
Decisions
- Meeting frequency? Monthly or every 2 months?
- Duration? 1 hour?
- Location: CCBR Red Room
Normal meetings
- Tutorial/discussion about specific Cytoscape topic. Topics selected from a list, by demand/request from participants
- Potential tutorial topics
- Nature Protocols
Specific plugins e.g. BiNGO, MCODE, ActiveModules
- Developer plugin writing tutorial
- How to test Cytoscape and provide feedback to the core developers to make Cytoscape better.
- Ask participants for suggestions for things to discuss at normal meetings
- User experience and feedback sessions
- Cytoscape news – status of latest Cytoscape development, new papers using Cytoscape, developer participants, recently released plugins