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  • Gary Bader - Jan.28.2006 - I think there is a requirement in pathway drawing to have 2 edge types, one, like the neighbor node edge (node outside the child network linking to node inside the child network) and another type of edge, say meta edge, that links a node outside the child network to the metanode itself where the edge means that there is a relationship between an outside node and the entire child network. One biological example is a connection from some protein (outside node) to a molecular complex (metanode), but you don't know exactly which subunit in in the complex is interacting. The PATIKA and INOH papers have some nice cases illustrated. Also, I will ask Emek Demir in our lab (who wrote PATIKA) if he can give us some hints.

SimplifiedMetaNodeDataStructureRFC/Comment (last edited 2009-02-12 01:03:11 by localhost)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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