In version 2.3, a function to save entire Cytoscape session will be added. The file will be called "<filename>.cys" (cyc = CYtoscape Session). Basically, this is a zip file containing the following:

  1. CySession.xml

  2. vizmap.prop
  3. cytoscape.prop
  4. Arbitrary number of network files written in ["XGMML"].
  5. attributes.xml

A directory named with timestamp will be created and files above will be stored in the dir.

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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