Cytoscape Wiki
Brainstorm of Topics
Layout Manager / Broker - Scooter
Groups (formerly known as metanodes) - UCSF, Agilent
Hyperedges - Aglient
Vizmap Redesign - UCSD
- Automatic Plugin Import
- Remove Depracation Warnings
- Plugin Website
- Event Handling
- Usability Improvements
- GINY Refactoring
- Cytoscape Calss Cleanup
- Memory Mgt
- Properties / XML Config
- Layers / Annotation
- Library Reduction / Cleanup
CyAttributes Name Clashes
Papers
- Combining Attributes / Formulas
- Tools for Manual Layout (Bubble, Snap-To)
Filters - Ethan
- Vizmap
- Pathway Commons Connectivity
- Web Services / Database Connectivity Guidelines
- Testing / Performance Profiling
- Linkout from Attribute Browser
- Custom Edge Graphics
- GO Term Viewer