Cytoscape Wiki
Brainstorm of Topics
- Layout Manager / Broker
- Groups (formerly known as metanodes)
- Hyperedges
- Vizmap Redesign
- Automatic Plugin Import
- Remove Depracation Warnings
- Plugin Website
- Event Handling
- Usability Improvements
- GINY Refactoring
- Cytoscape Calss Cleanup
- Memory Mgt
- Properties / XML Config
- Layers / Annotation
- Library Reduction / Cleanup
CyAttributes Name Clashes
Papers
- Combining Attributes / Formulas
- Tools for Manual Layout (Bubble, Snap-To)
- Filters
- Vizmap
- Pathway Commons Connectivity
- Web Services / Database Connectivity Guidelines
- Testing