Differences between revisions 4 and 5
Revision 4 as of 2006-10-13 22:52:34
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Editor: cosiapat1
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Revision 5 as of 2006-10-13 23:14:49
Size: 1962
Editor: AlexPico
Comment:
Deletions are marked like this. Additions are marked like this.
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'''UCSF'''
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 * Remove Depracation Warnings - '''Scooter''' - ongoing
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'''Agilent'''
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 * Event Handling - '''Mike Creech, Allan K, Ben Gross''' (no full commitment) - (documentation 2.5)
'''UCSD'''
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 * Automatic Plugin Import - '''UCSD + Sarah''' - 2.5
 * Remove Deprecation Warnings - '''Scooter''' - ongoing
 * Linkout from Attribute Browser - '''Kei''' - 2.5
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 * Event Handling - '''Mike Creech, Allan K, Ben Gross''' (no full commitment) - (documentation 2.5)
 * Usability Assessment - '''Sarah, Pasteur''' - ongoing
 * Tutorials - '''User Specialist'''
 * GINY Refactoring - '''Architect'''
 * Memory Mgt - '''Mike Smoot''' - 2.5
 * GINY Refactoring - '''Chief Architect - ''Mike Smoot'''''
 * Properties / XML Config - '''Kei, Scooter''' - 2.5
 * Automatic Plugin Import - '''UCSD, Sarah''' - 2.5
 * Vizmap API - '''Mike Smoot, Sarah''' - 2.6
'''MSKCC'''
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 * Memory Mgt - '''Mike Smoot''' - 2.5
 * Properties / XML Config - '''Kei, Scooter''' - 2.5
 * Layers / Annotation / UI for cutsom nodes - '''UCSF, Ben, Allan K''' - 2.5
 * CyAttributes Name Clashes - '''Ethan''' - 2.5
 * Pathway Commons Connectivity - '''MSKCC, Gary''' - (website 2.5)
 * Filters - '''Ethan, Mike Smoot''' - 2.5
 * Combining Attributes / Formulas - '''Ethan, Scooter, Alex''' - 2.6
'''ISB'''
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 * CyAttributes Name Clashes - '''Ethan''' - 2.5  * Web Services / Database Connectivity Guidelines - '''Sarah, Alex''' - 2.5
'''Pasteur'''
 * Usability Assessment - '''Pasteur, Sarah''' - ongoing
'''Piet, AMS'''
 * Performance Profiling - '''Piet''' - ongoing
 * Testing - '''Piet, Tero''' - 2.5
 * Undo Manager - '''Piet, Allan K, Peng''' - ongoing
'''Collective Leadership'''
 * Interactive Layout (Bubble, Snap-To) - '''UCSF, Aglient, Ben''' - 2.5
 * Layers / Annotation / UI for cutsom nodes - '''UCSF, Allan K, Ben''' - 2.5
 * Custom Node / Edge Graphics - '''MIM?, UCSF, Allan K, Ben''' - 2.6
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 * Combining Attributes / Formulas - '''Ethan, Scooter, Alex''' - 2.6
 * Interactive Layout (Bubble, Snap-To) - '''UCSF, Aglient, Ben''' - 2.5
 * Filters - '''Ethan, Mike Smoot''' - 2.5
 * Vizmap API - '''Mike Smoot, Sarah''' - 2.6
 * Pathway Commons Connectivity - '''MSKCC, Gary''' - (website 2.5)
 * Web Services / Database Connectivity Guidelines - '''Sarah, Alex''' - 2.5
 * Testing - '''Piet, Tero''' - 2.5
 * Performance Profiling - '''Piet''' - ongoing
 * Linkout from Attribute Browser - '''Kei''' - 2.5
 * Custom Node / Edge Graphics - '''MIM?''' - 2.6
 * Undo Manager - '''Piet, Allan K, Peng''' - ongoing

 * Tutorials - '''Outreach Officer'''

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=== Cytoscape Offices ===
 * Chief Architect = '''''Mike Smoot'''''
 * Outreach Officer =

Brainstorm of Topics

UCSF

  • Layout Manager / Broker - Scooter - 2.5

  • Remove Depracation Warnings - Scooter - ongoing

  • Groups (formerly known as metanodes) - UCSF, Agilent - 2.5

Agilent

  • Hyperedges - Aglient - 2.5

  • Event Handling - Mike Creech, Allan K, Ben Gross (no full commitment) - (documentation 2.5)

UCSD

  • Vizmap Redesign UI - UCSD - 2.6

  • Linkout from Attribute Browser - Kei - 2.5

  • Plugin Website - UCSD - 2.5+

  • Memory Mgt - Mike Smoot - 2.5

  • GINY Refactoring - Chief Architect - Mike Smoot

  • Properties / XML Config - Kei, Scooter - 2.5

  • Automatic Plugin Import - UCSD, Sarah - 2.5

  • Vizmap API - Mike Smoot, Sarah - 2.6

MSKCC

  • Cytoscape Calss Cleanup - Ethan - 2.5

  • CyAttributes Name Clashes - Ethan - 2.5

  • Pathway Commons Connectivity - MSKCC, Gary - (website 2.5)

  • Filters - Ethan, Mike Smoot - 2.5

  • Combining Attributes / Formulas - Ethan, Scooter, Alex - 2.6

ISB

  • Library Reduction / Cleanup - Sarah - 2.5

  • Web Services / Database Connectivity Guidelines - Sarah, Alex - 2.5

Pasteur

  • Usability Assessment - Pasteur, Sarah - ongoing

Piet, AMS

  • Performance Profiling - Piet - ongoing

  • Testing - Piet, Tero - 2.5

  • Undo Manager - Piet, Allan K, Peng - ongoing

Collective Leadership

  • Interactive Layout (Bubble, Snap-To) - UCSF, Aglient, Ben - 2.5

  • Layers / Annotation / UI for cutsom nodes - UCSF, Allan K, Ben - 2.5

  • Custom Node / Edge Graphics - MIM?, UCSF, Allan K, Ben - 2.6

  • Papers - All - ongoing

  • Tutorials - Outreach Officer

Overall Themes

  1. Pathway / Annnotation
  2. Usability
  3. Navigation / Find

Cytoscape Offices

  • Chief Architect = Mike Smoot

  • Outreach Officer =

RoadMap2006 (last edited 2009-02-12 01:03:28 by localhost)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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