Diff for "RoadMap2006" - Cytoscape Wiki

Differences between revisions 4 and 16 (spanning 12 versions)

This page has been retired in favor of this one: [:Cytoscape_2.5]. See that page for the most current updates.'

Brainstorm of Topics

UCSF
Layout Manager / Broker - Scooter - 2.5
Remove Deprecation Warnings - Scooter - 2.5, ongoing
Groups (formerly known as metanodes) - UCSF, Agilent - 2.5
Agilent
Hyperedges - Aglient - 2.5
Document Event Handling - Mike Creech, Allan K, Ben Gross (write Doclets)
UCSD

Vizmap Redesign UI - UCSD - 2.5 Kei
Linkout from Attribute Browser - Kei - 2.5
Plugin Website - UCSD - 2.5+ Peng
Memory Mgt - Mike Smoot - 2.5

GINY Refactoring - Chief Architect - Mike Smoot - beyond
Properties / XML Config - Kei, Scooter - 2.5+
Automatic Plugin Import - Peng, Sarah - 2.5
Vizmap API - Mike Smoot, Sarah - 2.6

MSKCC

Cytoscape Calss Cleanup - Ethan - 2.5
CyAttributes Name Clashes - Ethan - 2.5
Pathway Commons Connectivity - MSKCC, Gary - (website 2.5)
Filters - Ethan, Mike Smoot - 2.5
Combining Attributes / Formulas - Ethan, Scooter, Alex - 2.6

ISB

Library Reduction / Cleanup - Sarah - 2.5
Web Services / Database Connectivity Guidelines - Sarah, Alex - 2.5

Pasteur

Usability Assessment - Pasteur, Sarah, M. X - ongoing

Piet, AMC

Performance Profiling - Piet - ongoing
Testing - Piet, Tero - 2.5
Undo Manager - Piet, Peng - ongoing

Collective Leadership

Interactive Layout (Bubble, Snap-To) - Alex, Allan K, Ben - 2.5
Layers / Annotation / UI for cutsom nodes - Alex, Allan K, Ben - 2.5
Custom Node / Edge Graphics - MIM?, UCSF, Allan K, Ben - 2.6
Papers - All - ongoing

Unassigned

Tutorials - Outreach Officer
Website Content Update - Webmaster
- generate list of content that requires update to help distribute task
- create cyto-helpdesk and advertise it

Overall Themes

Pathway / Annnotation
Usability
Navigation / Find

Cytoscape Offices

Chief Architect = Mike Smoot
Outreach Officer = back to the board, possible split up the tasks
Webmaster = ...anyone?... Gary can offer some restructuring of wiki; undergrad plus supervisor

-  ← Revision 4 as of 2006-10-13 22:52:34 →
  Size: 1693
  Editor: cosiapat1
  Comment:
+  ← Revision 16 as of 2007-01-18 18:55:49 →
  Size: 2452
  Editor: nebbiolo
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
+<!> '''''This page has been retired in favor of this one: [:Cytoscape_2.5].  See that page for the most current updates.'''' <!>
-Line 2:
+Line 4:
+'''UCSF'''
-Line 3:
+Line 7:
+ * Remove Deprecation Warnings - '''Scooter''' - 2.5, ongoing
-Line 4:
+Line 9:
+'''Agilent'''
-Line 5:
+Line 12:
- * Vizmap Redesign UI - '''UCSD''' - 2.6

 * Automatic Plugin Import - '''UCSD + Sarah''' - 2.5

 * Remove Deprecation Warnings - '''Scooter''' - ongoing

 * Plugin Website - '''UCSD''' - 2.5+

 * Event Handling - '''Mike Creech, Allan K, Ben Gross''' (no full commitment) - (documentation 2.5)

 * Usability Assessment - '''Sarah, Pasteur''' - ongoing

 * Tutorials - '''User Specialist'''

 * GINY Refactoring - '''Architect'''
+ * Document Event Handling - '''Mike Creech, Allan K, Ben Gross''' (write Doclets)

'''UCSD'''



 * Vizmap Redesign UI - '''UCSD''' - 2.5 '''Kei'''

 * Linkout from Attribute Browser - '''Kei''' - 2.5

 * Plugin Website - '''UCSD''' - 2.5+ '''Peng'''

 * Memory Mgt - '''Mike Smoot''' - 2.5

 * GINY Refactoring - '''Chief Architect - ''Mike Smoot''''' - beyond

 * Properties / XML Config - '''Kei, Scooter''' - 2.5+

 * Automatic Plugin Import - '''Peng, Sarah''' - 2.5

 * Vizmap API - '''Mike Smoot, Sarah''' - 2.6

'''MSKCC'''
-Line 14:
+Line 26:
- * Memory Mgt - '''Mike Smoot''' - 2.5

 * Properties / XML Config - '''Kei, Scooter''' - 2.5

 * Layers / Annotation / UI for cutsom nodes - '''UCSF, Ben, Allan K''' - 2.5
+ * CyAttributes Name Clashes - '''Ethan''' - 2.5

 * Pathway Commons Connectivity - '''MSKCC, Gary''' - (website 2.5)

 * Filters - '''Ethan, Mike Smoot''' - 2.5

 * Combining Attributes / Formulas - '''Ethan, Scooter, Alex''' - 2.6

'''ISB'''
-Line 18:
+Line 33:
- * CyAttributes Name Clashes - '''Ethan''' - 2.5
+ * Web Services / Database Connectivity Guidelines - '''Sarah, Alex''' - 2.5

'''Pasteur'''



 * Usability Assessment - '''Pasteur, Sarah, M. X''' - ongoing

'''Piet, AMC'''



 * Performance Profiling - '''Piet''' - ongoing

 * Testing - '''Piet, Tero''' - 2.5

 * Undo Manager - '''Piet, Peng''' - ongoing

'''Collective Leadership'''



 * Interactive Layout (Bubble, Snap-To) - '''Alex, Allan K, Ben''' - 2.5

 * Layers / Annotation / UI for cutsom nodes - '''Alex, Allan K, Ben''' - 2.5

 * Custom Node / Edge Graphics - '''MIM?, UCSF, Allan K, Ben''' - 2.6
-Line 20:
+Line 48:
- * Combining Attributes / Formulas - '''Ethan, Scooter, Alex''' - 2.6

 * Interactive Layout (Bubble, Snap-To) - '''UCSF, Aglient, Ben''' - 2.5

 * Filters - '''Ethan, Mike Smoot''' - 2.5

 * Vizmap API - '''Mike Smoot, Sarah''' - 2.6

 * Pathway Commons Connectivity - '''MSKCC, Gary''' - (website 2.5)

 * Web Services / Database Connectivity Guidelines - '''Sarah, Alex''' - 2.5

 * Testing - '''Piet, Tero''' - 2.5

 * Performance Profiling - '''Piet''' - ongoing

 * Linkout from Attribute Browser - '''Kei''' - 2.5

 * Custom Node / Edge Graphics - '''MIM?''' - 2.6

 * Undo Manager - '''Piet, Allan K, Peng''' - ongoing
+'''Unassigned'''
-Line 32:
+Line 50:
+ * Tutorials - '''Outreach Officer'''

 * Website Content Update - '''Webmaster'''

  * generate list of content that requires update to help distribute task

  * create cyto-helpdesk and advertise it
-Line 36:
+Line 58:
+=== Cytoscape Offices ===

 * Chief Architect = '''''Mike Smoot'''''

 * Outreach Officer = ''back to the board, possible split up the tasks''

 * Webmaster = ''...anyone?...  Gary can offer some restructuring of wiki; undergrad plus supervisor''