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* Layout Manager / Broker - '''Scooter''' * Groups (formerly known as metanodes) - '''UCSF, Agilent''' * Hyperedges - '''Aglient''' * Vizmap Redesign - '''UCSD''' * Automatic Plugin Import * Remove Depracation Warnings * Plugin Website * Event Handling * Usability Improvements * GINY Refactoring * Cytoscape Calss Cleanup * Memory Mgt * Properties / XML Config * Layers / Annotation * Library Reduction / Cleanup * CyAttributes Name Clashes * '''Papers''' * Combining Attributes / Formulas * Tools for Manual Layout (Bubble, Snap-To) * Filters - '''Ethan''' * Vizmap * Pathway Commons Connectivity * Web Services / Database Connectivity Guidelines * Testing / Performance Profiling * Linkout from Attribute Browser * Custom Edge Graphics * GO Term Viewer |
'''UCSF''' * Layout Manager / Broker - '''Scooter''' - 2.5 * Remove Deprecation Warnings - '''Scooter''' - ongoing * Groups (formerly known as metanodes) - '''UCSF, Agilent''' - 2.5 '''Agilent''' * Hyperedges - '''Aglient''' - 2.5 * Event Handling - '''Mike Creech, Allan K, Ben Gross''' (no full commitment) - (documentation 2.5) '''UCSD''' * Vizmap Redesign UI - '''UCSD''' - 2.6 * Linkout from Attribute Browser - '''Kei''' - 2.5 * Plugin Website - '''UCSD''' - 2.5+ * Memory Mgt - '''Mike Smoot''' - 2.5 * GINY Refactoring - '''Chief Architect - ''Mike Smoot''''' * Properties / XML Config - '''Kei, Scooter''' - 2.5 * Automatic Plugin Import - '''UCSD, Sarah''' - 2.5 * Vizmap API - '''Mike Smoot, Sarah''' - 2.6 '''MSKCC''' * Cytoscape Calss Cleanup - '''Ethan''' - 2.5 * CyAttributes Name Clashes - '''Ethan''' - 2.5 * Pathway Commons Connectivity - '''MSKCC, Gary''' - (website 2.5) * Filters - '''Ethan, Mike Smoot''' - 2.5 * Combining Attributes / Formulas - '''Ethan, Scooter, Alex''' - 2.6 '''ISB''' * Library Reduction / Cleanup - '''Sarah''' - 2.5 * Web Services / Database Connectivity Guidelines - '''Sarah, Alex''' - 2.5 '''Pasteur''' * Usability Assessment - '''Pasteur, Sarah''' - ongoing '''Piet, AMS''' * Performance Profiling - '''Piet''' - ongoing * Testing - '''Piet, Tero''' - 2.5 * Undo Manager - '''Piet, Allan K, Peng''' - ongoing '''Collective Leadership''' * Interactive Layout (Bubble, Snap-To) - '''UCSF, Aglient, Ben''' - 2.5 * Layers / Annotation / UI for cutsom nodes - '''UCSF, Allan K, Ben''' - 2.5 * Custom Node / Edge Graphics - '''MIM?, UCSF, Allan K, Ben''' - 2.6 * Papers - '''All''' - ongoing * Tutorials - '''Outreach Officer''' === Overall Themes === 1. Pathway / Annnotation 1. Usability 1. Navigation / Find === Cytoscape Offices === * Chief Architect = '''''Mike Smoot''''' * Outreach Officer = |
Brainstorm of Topics
UCSF
Layout Manager / Broker - Scooter - 2.5
Remove Deprecation Warnings - Scooter - ongoing
Groups (formerly known as metanodes) - UCSF, Agilent - 2.5
Agilent
Hyperedges - Aglient - 2.5
Event Handling - Mike Creech, Allan K, Ben Gross (no full commitment) - (documentation 2.5)
UCSD
Vizmap Redesign UI - UCSD - 2.6
Linkout from Attribute Browser - Kei - 2.5
Plugin Website - UCSD - 2.5+
Memory Mgt - Mike Smoot - 2.5
GINY Refactoring - Chief Architect - Mike Smoot
Properties / XML Config - Kei, Scooter - 2.5
Automatic Plugin Import - UCSD, Sarah - 2.5
Vizmap API - Mike Smoot, Sarah - 2.6
MSKCC
Cytoscape Calss Cleanup - Ethan - 2.5
CyAttributes Name Clashes - Ethan - 2.5
Pathway Commons Connectivity - MSKCC, Gary - (website 2.5)
Filters - Ethan, Mike Smoot - 2.5
Combining Attributes / Formulas - Ethan, Scooter, Alex - 2.6
ISB
Library Reduction / Cleanup - Sarah - 2.5
Web Services / Database Connectivity Guidelines - Sarah, Alex - 2.5
Pasteur
Usability Assessment - Pasteur, Sarah - ongoing
Piet, AMS
Performance Profiling - Piet - ongoing
Testing - Piet, Tero - 2.5
Undo Manager - Piet, Allan K, Peng - ongoing
Collective Leadership
Interactive Layout (Bubble, Snap-To) - UCSF, Aglient, Ben - 2.5
Layers / Annotation / UI for cutsom nodes - UCSF, Allan K, Ben - 2.5
Custom Node / Edge Graphics - MIM?, UCSF, Allan K, Ben - 2.6
Papers - All - ongoing
Tutorials - Outreach Officer
Overall Themes
- Pathway / Annnotation
- Usability
- Navigation / Find
Cytoscape Offices
Chief Architect = Mike Smoot
- Outreach Officer =