Diff for "RoadMap2006" - Cytoscape Wiki

Differences between revisions 2 and 6 (spanning 4 versions)

Brainstorm of Topics

UCSF

Layout Manager / Broker - Scooter - 2.5
Remove Deprecation Warnings - Scooter - ongoing
Groups (formerly known as metanodes) - UCSF, Agilent - 2.5

Agilent

Hyperedges - Aglient - 2.5
Event Handling - Mike Creech, Allan K, Ben Gross (no full commitment) - (documentation 2.5)

UCSD

Vizmap Redesign UI - UCSD - 2.6
Linkout from Attribute Browser - Kei - 2.5
Plugin Website - UCSD - 2.5+
Memory Mgt - Mike Smoot - 2.5
GINY Refactoring - Chief Architect - Mike Smoot
Properties / XML Config - Kei, Scooter - 2.5
Automatic Plugin Import - UCSD, Sarah - 2.5
Vizmap API - Mike Smoot, Sarah - 2.6

MSKCC

Cytoscape Calss Cleanup - Ethan - 2.5
CyAttributes Name Clashes - Ethan - 2.5
Pathway Commons Connectivity - MSKCC, Gary - (website 2.5)
Filters - Ethan, Mike Smoot - 2.5
Combining Attributes / Formulas - Ethan, Scooter, Alex - 2.6

ISB

Library Reduction / Cleanup - Sarah - 2.5
Web Services / Database Connectivity Guidelines - Sarah, Alex - 2.5

Pasteur

Usability Assessment - Pasteur, Sarah - ongoing

Piet, AMS

Performance Profiling - Piet - ongoing
Testing - Piet, Tero - 2.5
Undo Manager - Piet, Allan K, Peng - ongoing

Collective Leadership

Interactive Layout (Bubble, Snap-To) - UCSF, Aglient, Ben - 2.5
Layers / Annotation / UI for cutsom nodes - UCSF, Allan K, Ben - 2.5
Custom Node / Edge Graphics - MIM?, UCSF, Allan K, Ben - 2.6
Papers - All - ongoing
Tutorials - Outreach Officer

Overall Themes

Pathway / Annnotation
Usability
Navigation / Find

Cytoscape Offices

Chief Architect = Mike Smoot
Outreach Officer =

-  ← Revision 2 as of 2006-10-13 22:13:20 →
  Size: 841
  Editor: AlexPico
  Comment:
+  ← Revision 6 as of 2006-10-13 23:15:43 →
  Size: 1962
  Editor: GaryBader
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 2:
- * Layout Manager / Broker - '''Scooter'''

 * Groups (formerly known as metanodes) - '''UCSF, Agilent'''

 * Hyperedges - '''Aglient'''

 * Vizmap Redesign - '''UCSD'''

 * Automatic Plugin Import

 * Remove Depracation Warnings

 * Plugin Website

 * Event Handling

 * Usability Improvements

 * GINY Refactoring

 * Cytoscape Calss Cleanup

 * Memory Mgt

 * Properties / XML Config 

 * Layers / Annotation

 * Library Reduction / Cleanup

 * CyAttributes Name Clashes

 * '''Papers'''

 * Combining Attributes / Formulas

 * Tools for Manual Layout (Bubble, Snap-To)

 * Filters - '''Ethan'''

 * Vizmap

 * Pathway Commons Connectivity

 * Web Services / Database Connectivity Guidelines

 * Testing / Performance Profiling

 * Linkout from Attribute Browser

 * Custom Edge Graphics

 * GO Term Viewer
+'''UCSF'''

 * Layout Manager / Broker - '''Scooter''' - 2.5

 * Remove Deprecation Warnings - '''Scooter''' - ongoing

 * Groups (formerly known as metanodes) - '''UCSF, Agilent''' - 2.5

'''Agilent'''

 * Hyperedges - '''Aglient''' - 2.5

 * Event Handling - '''Mike Creech, Allan K, Ben Gross''' (no full commitment) - (documentation 2.5)

'''UCSD'''

 * Vizmap Redesign UI - '''UCSD''' - 2.6

 * Linkout from Attribute Browser - '''Kei''' - 2.5

 * Plugin Website - '''UCSD''' - 2.5+

 * Memory Mgt - '''Mike Smoot''' - 2.5

 * GINY Refactoring - '''Chief Architect - ''Mike Smoot'''''

 * Properties / XML Config - '''Kei, Scooter''' - 2.5

 * Automatic Plugin Import - '''UCSD, Sarah''' - 2.5

 * Vizmap API - '''Mike Smoot, Sarah''' - 2.6

'''MSKCC'''

 * Cytoscape Calss Cleanup - '''Ethan''' - 2.5

 * CyAttributes Name Clashes - '''Ethan''' - 2.5

 * Pathway Commons Connectivity - '''MSKCC, Gary''' - (website 2.5)

 * Filters - '''Ethan, Mike Smoot''' - 2.5

 * Combining Attributes / Formulas - '''Ethan, Scooter, Alex''' - 2.6

'''ISB'''

 * Library Reduction / Cleanup - '''Sarah''' - 2.5

 * Web Services / Database Connectivity Guidelines - '''Sarah, Alex''' - 2.5

'''Pasteur'''

 * Usability Assessment - '''Pasteur, Sarah''' - ongoing

'''Piet, AMS'''

 * Performance Profiling - '''Piet''' - ongoing

 * Testing - '''Piet, Tero''' - 2.5

 * Undo Manager - '''Piet, Allan K, Peng''' - ongoing

'''Collective Leadership'''

 * Interactive Layout (Bubble, Snap-To) - '''UCSF, Aglient, Ben''' - 2.5

 * Layers / Annotation / UI for cutsom nodes - '''UCSF, Allan K, Ben''' - 2.5

 * Custom Node / Edge Graphics - '''MIM?, UCSF, Allan K, Ben''' - 2.6

 * Papers - '''All''' - ongoing



 * Tutorials - '''Outreach Officer'''







=== Overall Themes ===

 1. Pathway / Annnotation

 1. Usability

 1. Navigation / Find



=== Cytoscape Offices ===

 * Chief Architect = '''''Mike Smoot'''''

 * Outreach Officer =