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← Revision 1 as of 2006-10-13 22:06:12 →
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← Revision 16 as of 2007-01-18 18:55:49 →
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<!> '''''This page has been retired in favor of this one: [:Cytoscape_2.5]. See that page for the most current updates.'''' <!>
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 * Layout Manager / Broker
 * Groups (formerly known as metanodes)
 * Hyperedges
 * Vizmap Redesign
 * Automatic Plugin Import
 * Remove Depracation Warnings
 * Plugin Website
 * Event Handling
 * Usability Improvements
 * GINY Refactoring
 * Cytoscape Calss Cleanup
 * Memory Mgt
 * Properties / XML Config
 * Layers / Annotation
 * Library Reduction / Cleanup
 * CyAttributes Name Clashes
 * '''Papers'''
 * Combining Attributes / Formulas
 * Tools for Manual Layout (Bubble, Snap-To)
 * Filters
 * Vizmap
 * Pathway Commons Connectivity
 * Web Services / Database Connectivity Guidelines
 * Testing 		'''UCSF'''

 * Layout Manager / Broker - '''Scooter''' - 2.5
 * Remove Deprecation Warnings - '''Scooter''' - 2.5, ongoing
 * Groups (formerly known as metanodes) - '''UCSF, Agilent''' - 2.5
'''Agilent'''

 * Hyperedges - '''Aglient''' - 2.5
 * Document Event Handling - '''Mike Creech, Allan K, Ben Gross''' (write Doclets)
'''UCSD'''

 * Vizmap Redesign UI - '''UCSD''' - 2.5 '''Kei'''
 * Linkout from Attribute Browser - '''Kei''' - 2.5
 * Plugin Website - '''UCSD''' - 2.5+ '''Peng'''
 * Memory Mgt - '''Mike Smoot''' - 2.5
 * GINY Refactoring - '''Chief Architect - ''Mike Smoot''''' - beyond
 * Properties / XML Config - '''Kei, Scooter''' - 2.5+
 * Automatic Plugin Import - '''Peng, Sarah''' - 2.5
 * Vizmap API - '''Mike Smoot, Sarah''' - 2.6
'''MSKCC'''

 * Cytoscape Calss Cleanup - '''Ethan''' - 2.5
 * CyAttributes Name Clashes - '''Ethan''' - 2.5
 * Pathway Commons Connectivity - '''MSKCC, Gary''' - (website 2.5)
 * Filters - '''Ethan, Mike Smoot''' - 2.5
 * Combining Attributes / Formulas - '''Ethan, Scooter, Alex''' - 2.6
'''ISB'''

 * Library Reduction / Cleanup - '''Sarah''' - 2.5
 * Web Services / Database Connectivity Guidelines - '''Sarah, Alex''' - 2.5
'''Pasteur'''

 * Usability Assessment - '''Pasteur, Sarah, M. X''' - ongoing
'''Piet, AMC'''

 * Performance Profiling - '''Piet''' - ongoing
 * Testing - '''Piet, Tero''' - 2.5
 * Undo Manager - '''Piet, Peng''' - ongoing
'''Collective Leadership'''

 * Interactive Layout (Bubble, Snap-To) - '''Alex, Allan K, Ben''' - 2.5
 * Layers / Annotation / UI for cutsom nodes - '''Alex, Allan K, Ben''' - 2.5
 * Custom Node / Edge Graphics - '''MIM?, UCSF, Allan K, Ben''' - 2.6
 * Papers - '''All''' - ongoing
'''Unassigned'''

 * Tutorials - '''Outreach Officer'''
 * Website Content Update - '''Webmaster'''
  * generate list of content that requires update to help distribute task
  * create cyto-helpdesk and advertise it
=== Overall Themes ===
 1. Pathway / Annnotation
 1. Usability
 1. Navigation / Find
=== Cytoscape Offices ===
 * Chief Architect = '''''Mike Smoot'''''
 * Outreach Officer = ''back to the board, possible split up the tasks''
 * Webmaster = ''...anyone?... Gary can offer some restructuring of wiki; undergrad plus supervisor''

<!> This page has been retired in favor of this one: [:Cytoscape_2.5]. See that page for the most current updates.' <!>

Brainstorm of Topics

UCSF

  • Layout Manager / Broker - Scooter - 2.5

  • Remove Deprecation Warnings - Scooter - 2.5, ongoing

  • Groups (formerly known as metanodes) - UCSF, Agilent - 2.5

Agilent

  • Hyperedges - Aglient - 2.5

  • Document Event Handling - Mike Creech, Allan K, Ben Gross (write Doclets)

UCSD

  • Vizmap Redesign UI - UCSD - 2.5 Kei

  • Linkout from Attribute Browser - Kei - 2.5

  • Plugin Website - UCSD - 2.5+ Peng

  • Memory Mgt - Mike Smoot - 2.5

  • GINY Refactoring - Chief Architect - Mike Smoot - beyond

  • Properties / XML Config - Kei, Scooter - 2.5+

  • Automatic Plugin Import - Peng, Sarah - 2.5

  • Vizmap API - Mike Smoot, Sarah - 2.6

MSKCC

  • Cytoscape Calss Cleanup - Ethan - 2.5

  • CyAttributes Name Clashes - Ethan - 2.5

  • Pathway Commons Connectivity - MSKCC, Gary - (website 2.5)

  • Filters - Ethan, Mike Smoot - 2.5

  • Combining Attributes / Formulas - Ethan, Scooter, Alex - 2.6

ISB

  • Library Reduction / Cleanup - Sarah - 2.5

  • Web Services / Database Connectivity Guidelines - Sarah, Alex - 2.5

Pasteur

  • Usability Assessment - Pasteur, Sarah, M. X - ongoing

Piet, AMC

  • Performance Profiling - Piet - ongoing

  • Testing - Piet, Tero - 2.5

  • Undo Manager - Piet, Peng - ongoing

Collective Leadership

  • Interactive Layout (Bubble, Snap-To) - Alex, Allan K, Ben - 2.5

  • Layers / Annotation / UI for cutsom nodes - Alex, Allan K, Ben - 2.5

  • Custom Node / Edge Graphics - MIM?, UCSF, Allan K, Ben - 2.6

  • Papers - All - ongoing

Unassigned

  • Tutorials - Outreach Officer

  • Website Content Update - Webmaster

    • generate list of content that requires update to help distribute task
    • create cyto-helpdesk and advertise it

Overall Themes

  1. Pathway / Annnotation
  2. Usability
  3. Navigation / Find

Cytoscape Offices

  • Chief Architect = Mike Smoot

  • Outreach Officer = back to the board, possible split up the tasks

  • Webmaster = ...anyone?... Gary can offer some restructuring of wiki; undergrad plus supervisor

RoadMap2006 (last edited 2009-02-12 01:03:28 by localhost)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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